[ trixie ]
[ sid ]
[ experimental ]
[ Quellcode: r-bioc-saturn ]
Paket: r-bioc-saturn (1.12.0 dfsg-1)
Links für r-bioc-saturn
Debian-Ressourcen:
Quellcode-Paket r-bioc-saturn herunterladen:
- [r-bioc-saturn_1.12.0 dfsg-1.dsc]
- [r-bioc-saturn_1.12.0 dfsg.orig.tar.xz]
- [r-bioc-saturn_1.12.0 dfsg-1.debian.tar.xz]
Betreuer:
Externe Ressourcen:
- Homepage [bioconductor.org]
Ähnliche Pakete:
scalable analysis of differential transcript usage for RNA-sequencing
This Bioconductor package can be used for Scalable Analysis of Differential Transcript Usage for Bulk and Single-Cell RNA-sequencing.
Applications satuRn provides a higly performant and scalable framework for performing differential transcript usage analyses. The package consists of three main functions. The first function, fitDTU, fits quasi-binomial generalized linear models that model transcript usage in different groups of interest. The second function, testDTU, tests for differential usage of transcripts between groups of interest. Finally, plotDTU visualizes the usage profiles of transcripts in groups of interest.
Andere Pakete mit Bezug zu r-bioc-saturn
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- dep: r-api-4.0
- virtuelles Paket, bereitgestellt durch r-base-core
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- dep: r-api-bioc-3.19
- virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics
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- dep: r-bioc-biocparallel (>= 1.38.0)
- BioConductor facilities for parallel evaluation
-
- dep: r-bioc-limma (>= 3.60.4)
- linear models for microarray data
-
- dep: r-bioc-summarizedexperiment (>= 1.34.0)
- BioConductor assay container
-
- dep: r-cran-boot
- GNU R-Paket für bootstrapping-Funktionen von Davison und Hinkley
-
- dep: r-cran-ggplot2
- Implementierung der »Grammar of Graphics«
-
- dep: r-cran-locfdr
- GNU R computation of local false discovery rates
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- dep: r-cran-matrix
- GNU R - Paket von Klassen für dicht und dünn besetzte Matrizen
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- dep: r-cran-pbapply
- GNU R package providing progress bars for vectorized R functions
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- sug: r-bioc-annotationhub (>= 3.12.0)
- GNU R client to access AnnotationHub resources
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- sug: r-bioc-biocstyle (>= 2.32.1)
- standard styles for vignettes and other Bioconductor documents
-
- sug: r-bioc-delayedarray (>= 0.30.1)
- BioConductor delayed operations on array-like objects
-
- sug: r-bioc-dexseq (>= 1.50.0)
- GNU R inference of differential exon usage in RNA-Seq
-
- sug: r-bioc-edger (>= 4.2.1)
- Empirische Analyse von digitalen Genexpressionsdaten mit R
-
- sug: r-bioc-ensembldb (>= 2.28.0)
- GNU R utilities to create and use an Ensembl based annotation database
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- sug: r-cran-covr
- test coverage for GNU R packages
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-rmarkdown
- Konvertierung von R-Markdown-Dokumenten in verschiedene Formate
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- sug: r-cran-testthat
- GNU R testsuite
r-bioc-saturn herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| all | 2.948,2 kB | 3.033,0 kB | [Liste der Dateien] |