Paket: r-bioc-qusage (2.40.0-1)
Links für r-bioc-qusage
Debian-Ressourcen:
Quellcode-Paket r-bioc-qusage herunterladen:
- [r-bioc-qusage_2.40.0-1.dsc]
- [r-bioc-qusage_2.40.0.orig.tar.gz]
- [r-bioc-qusage_2.40.0-1.debian.tar.xz]
Betreuer:
Externe Ressourcen:
- Homepage [bioconductor.org]
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Experimentelles Paket
Warnung: Dieses Paket stammt aus der Experimental-Distribution. Dies bedeutet, dass es höchstwahrscheinlich instabil oder fehlerhaft ist und sogar Datenverlust verursachen kann. Bitte lesen Sie den Changelog und andere möglicherweise verfügbare Dokumentation, bevor Sie es benutzen.
qusage: Quantitative Set Analysis for Gene Expression
This package is an implementation the Quantitative Set Analysis for Gene Expression (QuSAGE) method described in (Yaari G. et al, Nucl Acids Res, 2013). This is a novel Gene Set Enrichment-type test, which is designed to provide a faster, more accurate, and easier to understand test for gene expression studies. qusage accounts for inter-gene correlations using the Variance Inflation Factor technique proposed by Wu et al. (Nucleic Acids Res, 2012). In addition, rather than simply evaluating the deviation from a null hypothesis with a single number (a P value), qusage quantifies gene set activity with a complete probability density function (PDF). From this PDF, P values and confidence intervals can be easily extracted. Preserving the PDF also allows for post-hoc analysis (e.g., pair-wise comparisons of gene set activity) while maintaining statistical traceability. Finally, while qusage is compatible with individual gene statistics from existing methods (e.g., LIMMA), a Welch-based method is implemented that is shown to improve specificity. For questions, contact Chris Bolen ([email protected]) or Steven Kleinstein ([email protected])
Andere Pakete mit Bezug zu r-bioc-qusage
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- dep: r-api-4.0
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- dep: r-api-bioc-3.20
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- dep: r-bioc-biobase
- base functions for Bioconductor
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- dep: r-bioc-limma (>= 3.14)
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r-bioc-qusage herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| all | 9.983,5 kB | 10.272,0 kB | [Liste der Dateien] |