Paket: pirs (2.0.2 dfsg-8)
Links für pirs
Debian-Ressourcen:
Quellcode-Paket pirs herunterladen:
Betreuer:
Externe Ressourcen:
- Homepage [github.com]
Ähnliche Pakete:
Profile based Illumina pair-end Reads Simulator
The program pIRS can be used for simulating Illumina PE reads, with a series of characters generated by Illumina sequencing platform, such as insert size distribution, sequencing error(substitution, insertion, deletion), quality score and GC content-coverage bias.
The insert size follows a normal distribution, so users should set the mean value and standard deviation. Usually the standard deviation is set as 1/20 of the mean value. The normal distribution by Box-Muller method is simulated.
The program simulates sequencing error, quality score and GC content- coverage bias according to the empirical distribution profile. Some default profiles counted from lots of real sequencing data are provided.
To simulate reads from diploid genome, users should simulate the diploid genome sequence firstly by setting the ratio of heterozygosis SNP, heterozygosis InDel and structure variation.
Andere Pakete mit Bezug zu pirs
|
|
|
|
-
- dep: fonts-liberation
- Schriften mit den gleichen Metriken wie Times, Arial und Courier
-
- dep: gnuplot
- Kommandozeilengesteuertes, interaktives Plot-Programm
auch ein virtuelles Paket, bereitgestellt durch gnuplot-nox, gnuplot-qt, gnuplot-x11
-
- dep: libc6 (>= 2.4)
- GNU-C-Bibliothek: Laufzeitbibliotheken
auch ein virtuelles Paket, bereitgestellt durch libc6-udeb
-
- dep: libgcc1 (>= 1:4.2)
- GCC Support-Bibliothek
-
- dep: libgomp1 (>= 4.9)
- Unterstützungsbibliothek für GCC OpenMP (GOMP)
-
- dep: libgzstream0 (>= 1.5 dfsg)
- provide functionality of zlib C-library in a C iostream
-
- dep: libstdc 6 (>= 5.2)
- GNU-Implementierung der Standard-C -Bibliothek (Version 3)
-
- dep: pirs-profiles
- profile basd Illumina pair-end Reads Simulator (profile data)
-
- dep: zlib1g (>= 1:1.2.0.2)
- Kompressions-Bibliothek - Laufzeit
pirs herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| i386 | 117,0 kB | 381,0 kB | [Liste der Dateien] |