Paket: fastqc (0.11.9 dfsg-6)

Links für fastqc

Debian-Ressourcen:

Quellcode-Paket fastqc herunterladen:

Betreuer:

Debian Med Packaging Team (QS-Seite, E-Mail-Archiv)
Steffen Moeller (QS-Seite)
Andreas Tille (QS-Seite)
Olivier Sallou (QS-Seite)

Externe Ressourcen:

Homepage [www.bioinformatics.babraham.ac.uk]

quality control for high throughput sequence data

FastQC aims to provide a simple way to do some quality control checks on raw sequence data coming from high throughput sequencing pipelines. It provides a modular set of analyses which you can use to give a quick impression of whether your data has any problems of which you should be aware before doing any further analysis.

The main functions of FastQC are

 * Import of data from BAM, SAM or FastQ files (any variant)
 * Providing a quick overview to tell you in which areas there may
   be problems
 * Summary graphs and tables to quickly assess your data
 * Export of results to an HTML based permanent report
 * Offline operation to allow automated generation of reports without
   running the interactive application

Markierungen: Benutzer-Schnittstellen: Graphical User Interface, X-Window-System, Rolle: Programm

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dep: default-jre

Standard Java or Java compatible Runtime
dep: libcommons-math3-java

Java lightweight mathematics and statistics components
dep: libfindbin-libs-perl

Perl module to use a relative path for lib directories
dep: libhtsjdk-java

Java API for high-throughput sequencing data (HTS) formats
dep: libjbzip2-java

bzip2 compression/decompression library
dep: libsis-jhdf5-java

easy-to-use HDF library for Java

fastqc herunterladen

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