[ Quellcode: r-bioc-genomicfeatures ]
Paket: r-bioc-genomicfeatures (1.50.4 dfsg-1)
Links für r-bioc-genomicfeatures
Debian-Ressourcen:
Quellcode-Paket r-bioc-genomicfeatures herunterladen:
- [r-bioc-genomicfeatures_1.50.4 dfsg-1.dsc]
- [r-bioc-genomicfeatures_1.50.4 dfsg.orig.tar.xz]
- [r-bioc-genomicfeatures_1.50.4 dfsg-1.debian.tar.xz]
Betreuer:
Externe Ressourcen:
- Homepage [bioconductor.org]
Ähnliche Pakete:
GNU R tools for making and manipulating transcript centric annotations
A set of tools and methods for making and manipulating transcript centric annotations. With these tools the user can easily download the genomic locations of the transcripts, exons and cds of a given organism, from either the UCSC Genome Browser or a BioMart database (more sources will be supported in the future). This information is then stored in a local database that keeps track of the relationship between transcripts, exons, cds and genes. Flexible methods are provided for extracting the desired features in a convenient format.
Andere Pakete mit Bezug zu r-bioc-genomicfeatures
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- dep: r-api-4.0
- virtuelles Paket, bereitgestellt durch r-base-core
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- dep: r-api-bioc-3.16
- virtuelles Paket, bereitgestellt durch r-bioc-biocgenerics
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- dep: r-base-core (>= 4.2.2.20221110-2)
- GNU R - System für statistische Berechnungen und Grafik - Kern
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- dep: r-bioc-annotationdbi (>= 1.41.4)
- GNU R Annotation Database Interface for BioConductor
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- dep: r-bioc-biobase (>= 2.15.1)
- base functions for Bioconductor
-
- dep: r-bioc-biocgenerics (>= 0.1.0)
- generic functions for Bioconductor
-
- dep: r-bioc-biocio
- standard input and output for Bioconductor packages
-
- dep: r-bioc-biomart (>= 2.17.1)
- GNU R Interface to BioMart databases (Ensembl, COSMIC, Wormbase and Gramene)
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- dep: r-bioc-biostrings (>= 2.47.6)
- GNU R string objects representing biological sequences
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- dep: r-bioc-genomeinfodb (>= 1.34.7)
- BioConductor utilities for manipulating chromosome identifiers
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- dep: r-bioc-genomicranges (>= 1.31.17)
- BioConductor representation and manipulation of genomic intervals
-
- dep: r-bioc-iranges (>= 2.13.23)
- GNU R low-level containers for storing sets of integer ranges
-
- dep: r-bioc-rtracklayer (>= 1.51.5)
- GNU R interface to genome browsers and their annotation tracks
-
- dep: r-bioc-s4vectors (>= 0.17.29)
- BioConductor S4 implementation of vectors and lists
-
- dep: r-bioc-xvector (>= 0.19.7)
- BioConductor representation and manpulation of external sequences
-
- dep: r-cran-dbi
- GNU-R-Paket, stellt eine allgemeine Datenbankschnittstelle bereit
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- dep: r-cran-rcurl
- GNU R General network (HTTP/FTP/...) client interface
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- dep: r-cran-rsqlite (>= 2.0)
- R-Datenbank-Schnittstellentreiber für SQLite
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- sug: r-bioc-annotationfilter
- facilities for filtering Bioconductor annotation resources
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- sug: r-bioc-biocstyle
- standard styles for vignettes and other Bioconductor documents
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- sug: r-bioc-bsgenome
- BioConductor infrastructure for Biostrings-based genome data packages
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- sug: r-bioc-ensembldb
- GNU R utilities to create and use an Ensembl based annotation database
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- sug: r-bioc-genomicalignments (>= 1.15.7)
- BioConductor representation and manipulation of short genomic alignments
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- sug: r-bioc-org.hs.eg.db
- genome-wide annotation for Human
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- sug: r-bioc-rsamtools
- GNU R binary alignment (BAM), variant call (BCF), or tabix file import
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- sug: r-cran-knitr
- GNU R package for dynamic report generation using Literate Programming
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- sug: r-cran-markdown
- Paket zur Anbindung von R an die Markdown-Darstellungsbibliothek Sundown
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- sug: r-cran-runit
- GNU-R-Paket, das ein Programmiergerüst für Komponententests bereitstellt
r-bioc-genomicfeatures herunterladen
| Architektur | Paketgröße | Größe (installiert) | Dateien |
|---|---|---|---|
| all | 1.636,6 kB | 4.552,0 kB | [Liste der Dateien] |