Пакет: gasic (0.0.r19-7)

Връзки за gasic

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Външни препратки:

Начална страница [sourceforge.net]

Подобни пакети:

genome abundance similarity correction

One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods.

Други пакети, свързани с gasic

зависимости

препоръчани

предложени

enhances

dep: bowtie

Ultrafast memory-efficient short read aligner
dep: bowtie2

ultrafast memory-efficient short read aligner
dep: bwa

Burrows-Wheeler Aligner
dep: python3

interactive high-level object-oriented language (default python3 version)
dep: python3-biopython

Python3 library for bioinformatics
dep: python3-matplotlib

Python based plotting system in a style similar to Matlab (Python 3)
dep: python3-numpy

Fast array facility to the Python 3 language
dep: python3-pysam

interface for the SAM/BAM sequence alignment and mapping format (Python 3)
dep: python3-scipy

scientific tools for Python 3
dep: seqan-apps

C library for the analysis of biological sequences

sug: gasic-examples

genome abundance similarity correction (example data)

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