Пакет: chip-seq (1.5.5-3)
Връзки за chip-seq
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Изтегляне на пакет-източник chip-seq.
Отговорници:
Външни препратки:
- Начална страница [ccg.epfl.ch]
Подобни пакети:
tools performing common ChIP-Seq data analysis tasks
The ChIP-Seq software provides a set of tools performing common genome- wide ChIP- seq analysis tasks, including positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-poor regions. These tools exist as stand-alone C programs and perform the following tasks:
1. Positional correlation analysis and generation of an aggregation plot (AP) (chipcor), 2. Extraction of specific genome annotation features around reference anchor points (chipextract), 3. Read centering or shifting (chipcenter), 4. Narrow peak caller using a fixed width peak size (chippeak), 5. Broad peak caller used for large regions of enrichment (chippart), 6. Feature selection tool based on a read count threshold (chipscore).
Because the ChIP-Seq tools are primarily optimized for speed, they use their own compact format for ChIP-seq data representation called SGA (Simplified Genome Annotation). SGA is a line-oriented, tab-delimited plain text format.
Други пакети, свързани с chip-seq
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- dep: chip-seq-data
- tools performing common ChIP-Seq data analysis tasks (data)
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- dep: libc6 (>= 2.7)
- GNU C Library: Shared libraries
също и виртуален пакет, предлаган от libc6-udeb
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- dep: libmath-round-perl
- Perl extension for rounding numbers
Изтегляне на chip-seq
Архитектура | Големина на пакета | Големина след инсталиране | Файлове |
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armel | 91,2 кБ | 418,0 кБ | [списък на файловете] |