Пакет: bioperl-run (1.7.3-9)

Връзки за bioperl-run

Ресурси за Debian:

Изтегляне на пакет-източник bioperl-run.

Отговорници:

Външни препратки:

Начална страница [metacpan.org]

Подобни пакети:

BioPerl wrappers: scripts

Contains scripts from the BioPerl-Run package. This package will also install all wrappable applications packaged in Debian. The ones that are not Free are "Suggested" by this package.

Етикети: Field: Biology, Bioinformatics, Implemented in: implemented-in::perl, interface::commandline, Role: Program

Други пакети, свързани с bioperl-run

зависимости

препоръчани

предложени

enhances

dep: bioperl (>= 1.7.4)

Perl tools for computational molecular biology
dep: default-jdk-headless

Standard Java or Java compatible Development Kit (headless)
dep: hyphy-pt

Hypothesis testing using Phylogenies (pthreads version)

или hyphy-mpi

Hypothesis testing using Phylogenies (MPI version)
dep: libbio-cluster-perl

BioPerl cluster modules
dep: libbio-eutilities-perl

BioPerl interface to the Entrez Programming Utilities (E-utilities)
dep: libbio-featureio-perl

Modules for reading, writing, and manipulating sequence features
dep: libbio-perl-run-perl (= 1.7.3-9)

BioPerl wrappers: modules
dep: libbio-tools-run-alignment-clustalw-perl

Bioperl interface to Clustal W
dep: libbio-tools-run-remoteblast-perl

Object for remote execution of the NCBI Blast via HTTP
dep: libsoap-lite-perl

Perl implementation of a SOAP client and server
dep: libtest-requiresinternet-perl

module to easily test network connectivity
dep: perl

Larry Wall's Practical Extraction and Report Language

rec: amap-align

Protein multiple alignment by sequence annealing
rec: bedtools

suite of utilities for comparing genomic features
rec: bowtie

Ultrafast memory-efficient short read aligner
rec: bwa

Burrows-Wheeler Aligner
rec: clustalw

global multiple nucleotide or peptide sequence alignment
rec: emboss

European molecular biology open software suite
rec: exonerate

generic tool for pairwise sequence comparison
rec: hmmer

profile hidden Markov models for protein sequence analysis
rec: infernal

inference of RNA secondary structural alignments
rec: kalign

Global and progressive multiple sequence alignment
rec: lagan

highly parametrizable pairwise global genome sequence aligner
rec: mafft

Multiple alignment program for amino acid or nucleotide sequences
rec: maq

maps short fixed-length polymorphic DNA sequence reads to reference sequences
rec: muscle

Multiple alignment program of protein sequences
rec: ncbi-blast -legacy

NCBI Blast legacy call script
rec: ncoils

coiled coil secondary structure prediction
rec: pal2nal

converts proteins to genomic DNA alignment
rec: pftools

build and search protein and DNA generalized profiles
rec: phylip

package of programs for inferring phylogenies
rec: phyml

Phylogenetic estimation using Maximum Likelihood
rec: primer3

tool to design flanking oligo nucleotides for DNA amplification
rec: probalign

multiple sequence alignment using partition function posterior probabilities
rec: probcons

PROBabilistic CONSistency-based multiple sequence alignment
rec: raxml

Randomized Axelerated Maximum Likelihood of phylogenetic trees
rec: samtools

processing sequence alignments in SAM, BAM and CRAM formats
rec: sim4

tool for aligning cDNA and genomic DNA
rec: t-coffee

Multiple Sequence Alignment
rec: tigr-glimmer

Gene detection in archea and bacteria
rec: wise

comparison of biopolymers, like DNA and protein sequences

sug: fasta3

tools for searching collections of biological sequences
sug: gmap

spliced and SNP-tolerant alignment for mRNA and short reads
sug: trnascan-se

detection of transfer RNA genes in genomic sequence

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Архитектура	Големина на пакета	Големина след инсталиране	Файлове
all	39,6 кБ	93,0 кБ	[списък на файловете]