(Q52012202)

19 April 2018

title

Electrostatic interactions in a peptide--RNA complex (English)

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19 April 2018

author name string

Cuauhtémoc García-García

series ordinal

1

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19 April 2018

David E Draper

series ordinal

2

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19 April 2018

language of work or name

English

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publication date

1 August 2003

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19 April 2018

Journal of Molecular Biology

published in

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19 April 2018

volume

331

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19 April 2018

issue

1

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19 April 2018

page(s)

75-88

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19 April 2018

Calculating the electrostatic properties of RNA provides new insights into molecular interactions and function

cites work

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Mg(2 ) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Structure-based analysis of protein-RNA interactions using the program ENTANGLE.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Analysis of arginine-rich peptides from the HIV Tat protein reveals unusual features of RNA-protein recognition

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Electrostatic interactions modulate the RNA-binding and transactivation specificities of the human immunodeficiency virus and simian immunodeficiency virus Tat proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Costabilization of peptide and RNA structure in an HIV Rev peptide-RRE complex

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

RNA Recognition by a Bent α-Helix Regulates Transcriptional Antitermination in Phage λ

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Contributions of basic residues to ribosomal protein L11 recognition of RNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Transcription antitermination: the lambda paradigm updated

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

NMR structure of the bacteriophage lambda N peptide/boxB RNA complex: recognition of a GNRA fold by an arginine-rich motif

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Classical electrostatics in biology and chemistry

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Salt effects on ligand-DNA binding. Minor groove binding antibiotics.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Salt effects on protein-DNA interactions. The lambda cI repressor and EcoRI endonuclease.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Structural Features that Give Rise to the Unusual Stability of RNA Hairpins Containing GNRA Loops

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

The sarcin/ricin loop, a modular RNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Model for an RNA tertiary interaction from the structure of an intermolecular complex between a GAAA tetraloop and an RNA helix.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Crystal structure of a group I ribozyme domain: principles of RNA packing

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Thermodynamic parameters for an expanded nearest-neighbor model for formation of RNA duplexes with Watson-Crick base pairs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Thermodynamic parameters for loop formation in RNA and DNA hairpin tetraloops

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Context dependence of hydrogen bond free energy revealed by substitutions in an RNA hairpin

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

7 January 2021

RNA structure prediction

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

An RNA enhancer in a phage transcriptional antitermination complex functions as a structural switch

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Structural variety of arginine-rich RNA-binding peptides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Complexes of N antitermination protein of phage lambda with specific and nonspecific RNA target sites on the nascent transcript

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Theory of the Phase Transition between Helix and Random Coil in Polypeptide Chains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Forcing Thermodynamically Unfolded Proteins to Fold

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

The osmophobic effect: natural selection of a thermodynamic force in protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Parameters of helix-coil transition theory for alanine-based peptides of varying chain lengths in water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Calorimetric determination of the enthalpy change for the alpha-helix to coil transition of an alanine peptide in water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Mechanism of helix induction by trifluoroethanol: a framework for extrapolating the helix-forming properties of peptides from trifluoroethanol/water mixtures back to water

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

The enthalpy of the alanine peptide helix measured by isothermal titration calorimetry using metal-binding to induce helix formation

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Equilibrium binding of Escherichia coli single-strand binding protein to single-stranded nucleic acids in the (SSB)65 binding mode. Cation and anion effects and polynucleotide specificity.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Ion effects on ligand-nucleic acid interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Thermodynamic analysis of ion effects on the binding and conformational equilibria of proteins and nucleic acids: the roles of ion association or release, screening, and ion effects on water activity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Protein-Nucleic Acid Interactions. II. Oligopeptide-Polyribonucleotide Binding Studies*

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Salt effects on polyelectrolyte-ligand binding: comparison of Poisson-Boltzmann, and limiting law/counterion binding models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Poisson-Boltzmann analysis of the lambda repressor-operator interaction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

A thermodynamic framework for Mg2 binding to RNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Electrostatic contributions to the binding free energy of the lambdacI repressor to DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Themes in RNA-protein recognition.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Helix stabilization by Glu-...Lys salt bridges in short peptides of de novo design

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Effect of a single aspartate on helix stability at different positions in a neutral alanine-based peptide

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Designed arginine-rich RNA-binding peptides with picomolar affinity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Salt-nucleic acid interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Thermodynamic extent of counterion release upon binding oligolysines to single-stranded nucleic acids

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Thermodynamics of oligoarginines binding to RNA and DNA

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Large electrostatic differences in the binding thermodynamics of a cationic peptide to oligomeric and polymeric DNA.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

The importance of coulombic end effects: experimental characterization of the effects of oligonucleotide flanking charges on the strength and salt dependence of oligocation (L8 ) binding to single-stranded DNA oligomers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Grand canonical Monte Carlo molecular and thermodynamic predictions of ion effects on binding of an oligocation (L8 ) to the center of DNA oligomers

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Monte Carlo description of oligoelectrolyte properties of DNA oligomers: range of the end effect and the approach of molecular and thermodynamic properties to the polyelectrolyte limits

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Base-stacking and base-pairing contributions to helix stability: thermodynamics of double-helix formation with CCGG, CCGGp, CCGGAp, ACCGGp, CCGGUp, and ACCGGUp

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

Osmolyte effects on helix formation in peptides and the stability of coiled-coils

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0022-2836(03)00615-6

10.1016/S0022-2836(03)00615-6

7 January 2021

Identifiers

DOI

1 reference

19 April 2018

1 reference

19 April 2018