(Q47295073)

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A comparative genomics analysis of codon reassignments reveals a link with mitochondrial proteome size and a mechanism of genetic code change via suppressor tRNAs

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Europe PubMed Central

PubMed publication ID

13 January 2018

http://europepmc.org/abstract/MED/17390094

A comparative genomics analysis of codon reassignments reveals a link with mitochondrial proteome size and a mechanism of genetic code change via suppressor tRNAs (English)

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Europe PubMed Central

PubMed publication ID

13 January 2018

http://europepmc.org/abstract/MED/17390094

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comparative genomics

1 reference

based on heuristic

inferred from title

2

1 reference

Europe PubMed Central

PubMed publication ID

13 January 2018

http://europepmc.org/abstract/MED/17390094

author name string

Steven E Massey

1

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Europe PubMed Central

PubMed publication ID

13 January 2018

http://europepmc.org/abstract/MED/17390094

publication date

27 March 2007

1 reference

Europe PubMed Central

PubMed publication ID

13 January 2018

http://europepmc.org/abstract/MED/17390094

Journal of Molecular Evolution

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Europe PubMed Central

PubMed publication ID

13 January 2018

http://europepmc.org/abstract/MED/17390094

64

1 reference

Europe PubMed Central

PubMed publication ID

13 January 2018

http://europepmc.org/abstract/MED/17390094

4

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Europe PubMed Central

PubMed publication ID

13 January 2018

http://europepmc.org/abstract/MED/17390094

399-410

1 reference

Europe PubMed Central

PubMed publication ID

13 January 2018

http://europepmc.org/abstract/MED/17390094

The chaperonin genes of jakobid and jakobid-like flagellates: implications for eukaryotic evolution.

1 reference

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Evolutionary relationships among "jakobid" flagellates as indicated by alpha- and beta-tubulin phylogenies.

1 reference

https://api.crossref.org/works/10.1007/S00239-005-0260-7

21 January 2018

Widespread and ancient distribution of a noncanonical genetic code in diplomonads

1 reference

https://api.crossref.org/works/10.1007/S00239-005-0260-7

21 January 2018

Glutamine is incorporated at the nonsense codons UAG and UAA in a suppressor-free Escherichia coli strain

1 reference

https://api.crossref.org/works/10.1007/S00239-005-0260-7

21 January 2018

Physiological levels of normal tRNA(CAGGln) can effect partial suppression of amber mutations in the yeast Saccharomyces cerevisiae.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

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Characterisation of a non-canonical genetic code in the oxymonad Streblomastix strix

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Murine leukemia virus protease is encoded by the gag-pol gene and is synthesized through suppression of an amber termination codon

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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A comparison of three fission yeast mitochondrial genomes

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https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Changes in mitochondrial genetic codes as phylogenetic characters: two examples from the flatworms

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12 December 2020

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Cysteine tRNAs of plant origin as novel UGA suppressors

1 reference

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12 December 2020

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The hypotrichous ciliate Euplotes octocarinatus has only one type of tRNACys with GCA anticodon encoded on a single macronuclear DNA molecule

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Strong homology between the small subunit of ribulose-1,5-bisphosphate carboxylase/oxygenase of two species of Acetabularia and the occurrence of unusual codon usage

1 reference

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12 December 2020

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A kingdom-level phylogeny of eukaryotes based on combined protein data

1 reference

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12 December 2020

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Identification of amino acids inserted during suppression of UAA and UGA termination codons at the gag-pol junction of Moloney murine leukemia virus

1 reference

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Pseudouridine in the anticodon G psi A of plant cytoplasmic tRNA(Tyr) is required for UAG and UAA suppression in the TMV-specific context

1 reference

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12 December 2020

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Directionally evolving genetic code: the UGA codon from stop to tryptophan in mitochondria.

1 reference

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12 December 2020

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On Error Minimization in a Sequential Origin of the Standard Genetic Code

1 reference

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12 December 2020

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An extra tRNAGly(U*CU) found in ascidian mitochondria responsible for decoding non-universal codons AGA/AGG as glycine

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Complete sequence of the amphioxus (Branchiostoma lanceolatum) mitochondrial genome: relations to vertebrates

1 reference

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Transfer RNA mutation and the malleability of the genetic code

1 reference

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12 December 2020

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Three Tetrahymena tRNA(Gln) isoacceptors as tools for studying unorthodox codon recognition and codon context effects during protein synthesis in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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The genetic code and error transmission

1 reference

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12 December 2020

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DNA sequence analysis of the complete mitochondrial genome of the green alga Scenedesmus obliquus: evidence for UAG being a leucine and UCA being a non-sense codon

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Tryptophan transfer RNA as the UGA suppressor

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Codon reassignment (codon capture) in evolution.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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The Closest Unicellular Relatives of Animals

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Mitochondrial tRNAs in the lower fungus Spizellomyces punctatus: tRNA editing and UAG 'stop' codons recognized as leucine

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Evolution of the mitochondrial genetic code. III. Reassignment of CUN codons from leucine to threonine during evolution of yeast mitochondria

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Isolation of a rat mitochondrial release factor. Accommodation of the changed genetic code for termination.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Natural UAG suppressor glutamine tRNA is elevated in mouse cells infected with Moloney murine leukemia virus

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Mitochondrial DNA of Chlamydomonas reinhardtii: the gene for apocytochrome b and the complete functional map of the 15.8 kb DNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Complete nucleotide sequence of the mitochondrial DNA from Kluyveromyces lactis

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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Effect of B. subtilis tRNATrp on Readthrough Rate at an Opal UGA Codon

1 reference

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12 December 2020

based on heuristic

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UGA is read as tryptophan in Mycoplasma capricolum

1 reference

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12 December 2020

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Unusual genetic codes and a novel gene structure for tRNA(AGYSer) in starfish mitochondrial DNA.

1 reference

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Complete sequence of the mitochondrial DNA of the chlorophyte alga Prototheca wickerhamii. Gene content and genome organization

1 reference

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A quantitative measure of error minimization in the genetic code

1 reference

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A deviant mitochondrial genetic code in prymnesiophytes (yellow-algae): UGA codon for tryptophan.

1 reference

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UAG is a sense codon in several chlorophycean mitochondria

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

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based on heuristic

inferred from PubMed ID database lookup

Evolutionary changes in the genetic code.

1 reference

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based on heuristic

inferred from PubMed ID database lookup

Partial suppression of an ochre mutation in Saccharomyces cerevisiae by multicopy plasmids containing a normal yeast tRNAGln gene

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Normal yeast tRNA(CAGGln) can suppress amber codons and is encoded by an essential gene

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogeny of Choanozoa, Apusozoa, and Other Protozoa and Early Eukaryote Megaevolution

1 reference

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12 December 2020

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On malleability in the genetic code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Genomic evolution drives the evolution of the translation system

1 reference

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Evolution of mitochondrial genomes and the genetic code

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEGA2: molecular evolutionary genetics analysis software

1 reference

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12 December 2020

based on heuristic

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The origin of the genetic code

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

An extreme codon preference strategy: codon reassignment.

1 reference

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12 December 2020

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Complete sequence of the mitochondrial DNA of the red alga Porphyra purpurea. Cyanobacterial introns and shared ancestry of red and green algae

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reductive evolution of resident genomes

1 reference

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based on heuristic

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Planarian mitochondria II. The unique genetic code as deduced from cytochrome c oxidase subunit I gene sequences

1 reference

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The mitochondrial DNA of Allomyces macrogynus: the complete genomic sequence from an ancestral fungus

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Novel amber suppressor tRNAs of mammalian origin.

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rabbit β-Globin Is Extended Beyond Its UGA Stop Codon by Multiple Suppressions and Translational Reading Gaps

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Wheat cytoplasmic arginine tRNA isoacceptor with a U*CG anticodon is an efficient UGA suppressor in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The molecular basis of nuclear genetic code change in ciliates.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recent evidence for evolution of the genetic code

1 reference

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12 December 2020

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Phylogenetic analysis of diatom coxI genes and implications of a fluctuating GC content on mitochondrial genetic code evolution

1 reference

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12 December 2020

based on heuristic

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The mitochondrial genome of the hemichordate Balanoglossus carnosus and the evolution of deuterostome mitochondria

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The leaky UGA termination codon of tobacco rattle virus RNA is suppressed by tobacco chloroplast and cytoplasmic tRNAs(Trp) with CmCA anticodon

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Complete sequence of the mitochondrial DNA of Chlamydomonas eugametos

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

First position wobble in codon-anticodon pairing: amber suppression by a yeast glutamine tRNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

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Comparative evolutionary genomics unveils the molecular mechanism of reassignment of the CTG codon in Candida spp

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

UGA can be decoded as tryptophan at low efficiency in Bacillus subtilis

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

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How Mitochondria Redefine the Code

1 reference

https://pubmed.ncbi.nlm.nih.gov/17390094

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1007/S00239-005-0260-7

1 reference

Europe PubMed Central

PubMed publication ID

13 January 2018

http://europepmc.org/abstract/MED/17390094

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

13 January 2018

http://europepmc.org/abstract/MED/17390094

ResearchGate publication ID

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