(Q40717886)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8114684 AND SRC:MED&resulttype=core&format=json

25 October 2019

review article

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title

DNA-protein interactions and spatial organization of DNA (English)

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8114684 AND SRC:MED&resulttype=core&format=json

25 October 2019

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8114684 AND SRC:MED&resulttype=core&format=json

25 October 2019

Władysław Krajewski

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8114684 AND SRC:MED&resulttype=core&format=json

25 October 2019

author name string

W A Krajewski

series ordinal

1

1 reference

23 September 2017

language of work or name

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1 October 1993

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8114684 AND SRC:MED&resulttype=core&format=json

Molecular Biology Reports

25 October 2019

published in

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25 October 2019

volume

18

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8114684 AND SRC:MED&resulttype=core&format=json

25 October 2019

issue

3

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8114684 AND SRC:MED&resulttype=core&format=json

25 October 2019

page(s)

167-175

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8114684 AND SRC:MED&resulttype=core&format=json

Purification of RIP60 and RIP100, mammalian proteins with origin-specific DNA-binding and ATP-dependent DNA helicase activities

25 October 2019

cites work

1 reference

Crossref

https://api.crossref.org/works/10.1007/BF01674427

The adenine-thymine domain of the simian virus 40 core origin directs DNA bending and coordinately regulates DNA replication

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007/BF01674427

RIP60, a mammalian origin-binding protein, enhances DNA bending near the dihydrofolate reductase origin of replication

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1007/BF01674427

Histone acetylation reduces nucleosome core particle linking number change

21 January 2018

1 reference

12 December 2020

Structure of a phage 434 Cro/DNA complex

1 reference

12 December 2020

Nucleosomal conformations induced by the small HMG proteins or by histone hyperacetylation are distinct

1 reference

12 December 2020

Stereoalignment requirements for activation of transcription by the simian virus 40 enhancer

1 reference

12 December 2020

Effect of high mobility group nonhistone proteins HMG-20 (ubiquitin) and HMG-17 on histone deacetylase activity assayed in vitro

1 reference

12 December 2020

Use of selectively trypsinized nucleosome core particles to analyze the role of the histone "tails" in the stabilization of the nucleosome

1 reference

12 December 2020

Studies on the association of the high mobility group non-histone chromatin proteins with isolated nucleosomes

1 reference

12 December 2020

Activation of distant replication origins in vivo by DNA looping as revealed by a novel mutant form of an initiator protein defective in cooperativity at a distance

1 reference

12 December 2020

An operator at -280 base pairs that is required for repression of araBAD operon promoter: addition of DNA helical turns between the operator and promoter cyclically hinders repression

1 reference

12 December 2020

The nucleoskeleton and the topology of replication

1 reference

12 December 2020

Thermal unwinding of simian virus 40 transcription complex DNA

1 reference

12 December 2020

The binding of the chromosomal protein HMG-2a to DNA regions of reduced stabilities

1 reference

12 December 2020

Chromatin assembly in Xenopus oocytes: In vitro studies

1 reference

12 December 2020

A hyper-recombination mutation in S. cerevisiae identifies a novel eukaryotic topoisomerase

1 reference

12 December 2020

Effects of histone hyperacetylation and hypoacetylation on RNA synthesis in HTC cells

1 reference

12 December 2020

Cell cycle-dependent changes in conformation and composition of nucleosomes containing human histone gene sequences

1 reference

12 December 2020

Supercoiling in prokaryotic and eukaryotic DNA: changes in response to topological perturbation of plasmids in E. coli and SV40 in vitro, in nuclei and in CV-1 cells

1 reference

12 December 2020

Different accessibilities in chromatin to histone acetylase

1 reference

12 December 2020

The positive transcription factor of the 5S RNA gene induces a 5S DNA-specific gyration in Xenopus oocyte extracts

1 reference

12 December 2020

Biology of bacterial deoxyribonucleic acid topoisomerases

1 reference

12 December 2020

Specific destruction of the second lac operator decreases repression of the lac operon in Escherichia coli fivefold

1 reference

12 December 2020

Transcription-induced nucleosome 'splitting': an underlying structure for DNase I sensitive chromatin

1 reference

12 December 2020

Both DNA topoisomerases I and II relax 2 micron plasmid DNA in living yeast cells

1 reference

12 December 2020

The FIS protein binds and bends the origin of chromosomal DNA replication, oriC, of Escherichia coli

1 reference

12 December 2020

Cooperativity of glucocorticoid response elements located far upstream of the tyrosine aminotransferase gene

1 reference

12 December 2020

Irresistible force meets immovable object: transcription and the nucleosome

1 reference

12 December 2020

A correlation between nucleosome spacer region susceptibility to DNase 1 and histone acetylation

1 reference

12 December 2020

Modulation of transcription by DNA supercoiling: a deletion analysis of the Escherichia coli gyrA and gyrB promoters

1 reference

12 December 2020

Spacing between simian virus 40 early transcriptional control sequences is important for regulation of early RNA synthesis and gene expression

1 reference

12 December 2020

Requirement of stereospecific alignments for initiation from the simian virus 40 early promoter

1 reference

12 December 2020

Histone hyperacetylation can induce unfolding of the nucleosome core particle

1 reference

12 December 2020

Separation and Properties of Two Kinds of Simian Virus 40 Late Transcription Complexes

1 reference

12 December 2020

Elastic torsional strain in DNA within a fraction of SV40 minichromosomes: relation to transcriptionally active chromatin

1 reference

12 December 2020

Transcribed chromatin

1 reference

12 December 2020

Structure of nucleosomes and organization of internucleosomal DNA in chromatin

1 reference

12 December 2020

Quantitation of transcribing native simian virus 40 minichromosomes extracted from CV1 cells late in infection

1 reference

12 December 2020

A DNA curvature can substitute phage phi 29 regulatory protein p4 when acting as a transcriptional repressor

1 reference

12 December 2020

A direct link between core histone acetylation and transcriptionally active chromatin

1 reference

12 December 2020

Transcription of Escherichia coli ara in vitro. The cyclic AMP receptor protein requirement for PBAD induction that depends on the presence and orientation of the araO2 site.

1 reference

12 December 2020

Structure of the repressor-operator complex of bacteriophage 434.

1 reference

12 December 2020

In vitro transcribed SV40 minichromosomes, as the bulk minichromosomes, have a low level of unconstrained negative supercoils

1 reference

12 December 2020

DNA in the nucleosome

1 reference

12 December 2020

Nucleosome-nucleosome interaction in chromatin

1 reference

12 December 2020

Interaction between the replication origin and the initiator protein of the filamentous phage f1. Binding occurs in two steps

1 reference

12 December 2020

Chromatin from transcribed genes contains HMG17 only downstream from the starting point of transcription

1 reference

12 December 2020

Nucleosome core particles suppress the thermal untwisting of core DNA and adjacent linker DNA.

1 reference

12 December 2020

Two operator sites separated by 599 base pairs are required for deoR repression of the deo operon of Escherichia coli

1 reference

12 December 2020

Change in the pattern of histone binding to DNA upon transcriptional activation

1 reference

12 December 2020

Purification and properties of RhaR, the positive regulator of the L-rhamnose operons of Escherichia coli

1 reference

12 December 2020

Affinity chromatographic purification of nucleosomes containing transcriptionally active DNA sequences

1 reference

12 December 2020

Structure of the two distinct types of minichromosomes that are assembled on DNA injected in Xenopus oocytes

1 reference

12 December 2020

Histone function in transcription

1 reference

12 December 2020

Organization of specific DNA sequence elements in the region of the replication origin and matrix attachment site in the chicken alpha-globin gene domain

1 reference

12 December 2020

DNA bending by negative regulatory proteins: Gal and Lac repressors

1 reference

12 December 2020

Demonstration of two operator elements in gal: in vitro repressor binding studies

1 reference

12 December 2020

Domain organization of eukaryotic genome

1 reference

12 December 2020

Reversible and irreversible changes in nucleosome structure along the c-fos and c-myc oncogenes following inhibition of transcription

1 reference

12 December 2020

Interaction of HMG14 with chromatin

1 reference

12 December 2020

In vitro transcription of eukaryotic genes is affected differently by the degree of DNA supercoiling

1 reference

12 December 2020

Structure of the nucleosome core particle at 7 Å resolution

1 reference

12 December 2020

Supercoiling of the DNA template during transcription

1 reference

12 December 2020

Yeast nucleosomes allow thermal untwisting of DNA.

1 reference

12 December 2020

Effect of non-contacted bases on the affinity of 434 operator for 434 repressor and Cro

1 reference

12 December 2020

Environmental stimuli and transcriptional activity generate transient changes in DNA torsional tension

1 reference

12 December 2020

Altered conformational effects of naturally acetylated histone f2al (IV) in f2al-deoxyribonucleic acid complexes. Circular dichroism studies.

1 reference

12 December 2020

1 reference

12 December 2020

High rotational mobility of DNA in animal cells and its modulation by histone acetylation

1 reference

12 December 2020

Nucleosomal Particles Open as the Histone Core Becomes Hyperacetylated

1 reference

12 December 2020

Assembly and propagation of repressed and depressed chromosomal states

1 reference

12 December 2020

Importance of DNA stiffness in protein-DNA binding specificity

1 reference

12 December 2020

A direct analysis of transcribed minichromosomes: all transcribed SV40 minichromosomes have a nuclease-hypersensitive region within a nucleosome-free domain.

1 reference

12 December 2020

DNA supercoiling and suppression of the leu-500 promoter mutation

1 reference

12 December 2020

The flexibility and topology of simian virus 40 DNA in minichromosomes

1 reference

12 December 2020

The identification of distinct populations of acetylated histone

1 reference

12 December 2020

Developmental regulation of chromatin structure and function

1 reference

12 December 2020

Histone hyperacetylation: its effects on nucleosome conformation and stability

1 reference

12 December 2020

Superhelical stress and nucleosome-mediated repression of 5S RNA gene transcription in vitro

1 reference

12 December 2020

Role of histone tyrosines in nucleosome formation and histone-histone interaction

1 reference

12 December 2020

Chromatin assembly in Xenopus oocytes: In vivo studies

1 reference

12 December 2020

Relationship of histone acetylation to DNA topology and transcription

1 reference

12 December 2020

Effect of trypsinization and histone H5 addition on DNA twist and topology in reconstituted minichromosomes

1 reference

12 December 2020

Histone hypoacetylation following release of HTC cells from butyrate

1 reference

12 December 2020

The DNA loop model for ara repression: AraC protein occupies the proposed loop sites in vivo and repression-negative mutations lie in these same sites

1 reference

12 December 2020

1 reference

12 December 2020

Bending of synthetic bacteriophage 434 operators by bacteriophage 434 proteins

1 reference

12 December 2020

Two deletions within genes for simian virus 40 structural proteins VP2 and VP3 lead to formation of abnormal transcriptional complexes

1 reference

12 December 2020

Direct evidence for DNA bending at the lambda replication origin

1 reference

12 December 2020

The locus of sequence-directed and protein-induced DNA bending

1 reference

12 December 2020

Topological characterization of the simian virus 40 transcription complex

1 reference

12 December 2020

The positive and negative transcriptional regulation of the Drosophila Gapdh-2 gene

1 reference

12 December 2020

Interactions between twisted DNAs and enzymes: the effects of superhelical turns

1 reference

12 December 2020

Chicken erythrocyte beta-globin chromatin: enhanced solubility is a direct consequence of induced histone hyperacetylation

1 reference

12 December 2020

lac repressor forms loops with linear DNA carrying two suitably spaced lac operators

1 reference

12 December 2020

Long-range cooperativity between gene regulatory sequences in a prokaryote.

1 reference

12 December 2020

Identification of a potent decatenating enzyme from Escherichia coli

1 reference

12 December 2020

Identification of a rat liver nuclear protein that binds to the enhancer core element of three animal viruses

1 reference

12 December 2020

Identifiers

DOI

10.1007/BF01674427

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8114684 AND SRC:MED&resulttype=core&format=json

25 October 2019

1 reference