(Q35670060)

9 August 2017

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title

A guide to ions and RNA structure (English)

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9 August 2017

David E Draper

1

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9 August 2017

language of work or name

English

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publication date

1 March 2004

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9 August 2017

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9 August 2017

volume

10

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9 August 2017

issue

3

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9 August 2017

page(s)

335-343

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Electrostatic interactions in a peptide--RNA complex.

9 August 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Single-molecule transition-state analysis of RNA folding

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

A compact RNA tertiary structure contains a buried backbone-K complex

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

A thermodynamic framework for Mg2 binding to RNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Energetics and cooperativity of tertiary hydrogen bonds in RNA structure

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Structure and thermodynamics of metal binding in the P5 helix of a group I intron ribozyme

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Raman spectroscopy of DNA-metal complexes. I. Interactions and conformational effects of the divalent cations: Mg, Ca, Sr, Ba, Mn, Co, Ni, Cu, Pd, and Cd

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Salt effects on ligand-DNA binding. Minor groove binding antibiotics.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Salt-nucleic acid interactions

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Significance and mechanism of divalent-ion binding to transfer RNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Transfer RNA in solution: selected topics

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Biological catalysis by RNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Electrical potential of transfer RNAs: codon-anticodon recognition.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Role of divalent metal ions in the hammerhead RNA cleavage reaction

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Conformational changes of transfer RNA. The role of magnesium(II)

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Equilibrium binding of magnesium(II) by Escherichia coli tRNAfMet

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

The molecular theory of polyelectrolyte solutions with applications to the electrostatic properties of polynucleotides

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Electrostatic effects in divalent ion binding to tRNA

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

A thermodynamic framework for the magnesium-dependent folding of RNA.

27 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

The linkage between magnesium binding and RNA folding.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Mg(2 ) binding to tRNA revisited: the nonlinear Poisson-Boltzmann model.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Thiophilic metal ion rescue of phosphorothioate interference within the Tetrahymena ribozyme P4-P6 domain

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Calculating the electrostatic properties of RNA provides new insights into molecular interactions and function

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Stabilization of RNA structure by Mg ions. Specific and non-specific effects.

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Metal coordination sites that contribute to structure and catalysis in the group I intron from Tetrahymena

25 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1370927

Hammerhead cleavage of the phosphorodithioate linkage

25 September 2018

1 reference

12 December 2020

Stabilization of RNA tertiary structure by monovalent cations

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12 December 2020

Counterion distribution around DNA probed by solution X-ray scattering

1 reference

12 December 2020

Conformational changes of transfer ribonucleic acid. Equilibrium phase diagrams

1 reference

12 December 2020

tRNA Conformation and Magnesium Binding. A Study of Yeast Phenylalanine-Specific tRNA by a Fluorescent Indicator and Differential Melting Curves

1 reference

12 December 2020

Tertiary Structure of tRNAPhe (Yeast): Kinetics and Electrostatic Repulsion

1 reference

12 December 2020

On the coordination properties of Eu3 bound to tRNA

1 reference

12 December 2020

Loss of translational entropy in binding, folding, and catalysis

1 reference

12 December 2020

Affinities and selectivities of divalent cation binding sites within an RNA tertiary structure

1 reference

12 December 2020

Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations

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12 December 2020

1 reference

12 December 2020

A thermodynamic framework and cooperativity in the tertiary folding of a Mg2 -dependent ribozyme

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12 December 2020

Identifiers

DOI

10.1261/RNA.5205404

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9 August 2017

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9 August 2017

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