(Q34718350)

4 August 2017

title

REDfly 2.0: an integrated database of cis-regulatory modules and transcription factor binding sites in Drosophila (English)

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4 August 2017

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Steven M Gallo

2

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Casey M Bergman

object named as

Casey M Bergman

series ordinal

3

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author name string

Marc S Halfon

series ordinal

1

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4 August 2017

language of work or name

English

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publication date

26 November 2007

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4 August 2017

published in

Nucleic Acids Research

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4 August 2017

volume

36

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4 August 2017

issue

Database issue

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4 August 2017

page(s)

D863-8

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Global analysis of patterns of gene expression during Drosophila embryogenesis

4 August 2017

cites work

1 reference

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FlyMine: an integrated database for Drosophila and Anopheles genomics

7 July 2018

1 reference

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Large-scale analysis of transcriptional cis-regulatory modules reveals both common features and distinct subclasses

7 July 2018

1 reference

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cis-Decoder discovers constellations of conserved DNA sequences shared among tissue-specific enhancers

7 July 2018

1 reference

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Unmasking activation of the zygotic genome using chromosomal deletions in the Drosophila embryo

7 July 2018

1 reference

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A core transcriptional network for early mesoderm development in Drosophila melanogaster

7 July 2018

1 reference

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The evolutionary significance of cis-regulatory mutations

7 July 2018

1 reference

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Large-scale discovery of promoter motifs in Drosophila melanogaster

7 July 2018

1 reference

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FlyBase: genomes by the dozen

7 July 2018

1 reference

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Large-scale turnover of functional transcription factor binding sites in Drosophila

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238825

Detecting the limits of regulatory element conservation and divergence estimation using pairwise and multiple alignments

7 July 2018

1 reference

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Fine scale structural variants distinguish the genomes of Drosophila melanogaster and D. pseudoobscura.

7 July 2018

1 reference

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Parametric alignment of Drosophila genomes

7 July 2018

1 reference

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A Temporal Map of Transcription Factor Activity: Mef2 Directly Regulates Target Genes at All Stages of Muscle Development

7 July 2018

1 reference

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FlyTF: a systematic review of site-specific transcription factors in the fruit fly Drosophila melanogaster

7 July 2018

1 reference

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ORegAnno: an open access database and curation system for literature-derived promoters, transcription factor binding sites and regulatory variation

7 July 2018

1 reference

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Ultraconserved elements in insect genomes: a highly conserved intronic sequence implicated in the control of homothorax mRNA splicing

7 July 2018

1 reference

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The Sequence Ontology: a tool for the unification of genome annotations

7 July 2018

1 reference

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Drosophila DNase I footprint database: a systematic genome annotation of transcription factor binding sites in the fruitfly, Drosophila melanogaster.

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238825

Systematic determination of patterns of gene expression during Drosophila embryogenesis

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238825

The generic genome browser: a building block for a model organism system database

7 July 2018

1 reference

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The human genome browser at UCSC

7 July 2018

1 reference

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Phenotypic data in FlyBase

7 July 2018

1 reference

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Indelign: a probabilistic framework for annotation of insertions and deletions in a multiple alignment

7 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238825

Identifying cis-regulatory modules by combining comparative and compositional analysis of DNA.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238825

Conservation patterns in different functional sequence categories of divergent Drosophila species.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238825

REDfly: a Regulatory Element Database for Drosophila.

26 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2238825

26 October 2018

Identifiers

DOI

10.1093/NAR/GKM876

1 reference

4 August 2017

DBLP publication ID

journals/nar/HalfonGB08

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

4 August 2017

1 reference