(Q34121912)

31 July 2017

1 reference

title

Toward an integrated structural model of the 26S proteasome (English)

1 reference

31 July 2017

4

Andrej Sali

0 references

author name string

Friedrich Förster

1

1 reference

31 July 2017

Keren Lasker

2

1 reference

31 July 2017

Stephan Nickell

3

1 reference

31 July 2017

Wolfgang Baumeister

5

1 reference

31 July 2017

publication date

13 May 2010

1 reference

Molecular & Cellular Proteomics

31 July 2017

published in

1 reference

31 July 2017

volume

9

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31 July 2017

issue

8

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31 July 2017

page(s)

1666-1677

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Integrative structure modeling of macromolecular assemblies from proteomics data

31 July 2017

cites work

1 reference

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5 July 2018

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Getting to first base in proteasome assembly

5 July 2018

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5 July 2018

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Insights into the molecular architecture of the 26S proteasome

5 July 2018

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Assembly pathway of the Mammalian proteasome base subcomplex is mediated by multiple specific chaperones

5 July 2018

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Recognition and processing of ubiquitin-protein conjugates by the proteasome

5 July 2018

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Mechanism of substrate unfolding and translocation by the regulatory particle of the proteasome from Methanocaldococcus jannaschii

5 July 2018

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Structural Insights into the Regulatory Particle of the Proteasome from Methanocaldococcus jannaschii

5 July 2018

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Structure and activity of the N-terminal substrate recognition domains in proteasomal ATPases

5 July 2018

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Multiple proteasome-interacting proteins assist the assembly of the yeast 19S regulatory particle

5 July 2018

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Multiple assembly chaperones govern biogenesis of the proteasome regulatory particle base

5 July 2018

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Hexameric assembly of the proteasomal ATPases is templated through their C termini

5 July 2018

1 reference

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Chaperone-mediated pathway of proteasome regulatory particle assembly

5 July 2018

1 reference

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Controlled destruction: AAA ATPases in protein degradation from bacteria to eukaryotes

5 July 2018

1 reference

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Electron microscopic evidence in support of alpha-solenoid models of proteasomal subunits Rpn1 and Rpn2.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Toward an atomic model of the 26S proteasome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

The structural dynamics of macromolecular processes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

K63-specific deubiquitination by two JAMM/MPN complexes: BRISC-associated Brcc36 and proteasomal Poh1

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Molecular mechanisms of proteasome assembly

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

The proteasome: overview of structure and functions

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Distinct modes of regulation of the Uch37 deubiquitinating enzyme in the proteasome and in the Ino80 chromatin-remodeling complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Hit and run: transient deubiquitylase activity in a chromatin-remodeling complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

The Arabidopsis COP9 Signalosome Subunit 7 Is a Model PCI Domain Protein with Subdomains Involved in COP9 Signalosome Assembly

5 July 2018

1 reference

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Differential roles of the COOH termini of AAA subunits of PA700 (19 S regulator) in asymmetric assembly and activation of the 26 S proteasome

5 July 2018

1 reference

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Structure of the human 26S proteasome: subunit radial displacements open the gate into the proteolytic core

5 July 2018

1 reference

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Ubiquitin docking at the proteasome through a novel pleckstrin-homology domain interaction

5 July 2018

1 reference

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Proteasome subunit Rpn13 is a novel ubiquitin receptor

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Mechanism of gate opening in the 20S proteasome by the proteasomal ATPases

5 July 2018

1 reference

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Identification of cross-linked peptides from large sequence databases

5 July 2018

1 reference

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Integrating diverse data for structure determination of macromolecular assemblies

5 July 2018

1 reference

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The molecular sociology of the cell

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

The molecular architecture of the nuclear pore complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Determining the architectures of macromolecular assemblies

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Docking of the proteasomal ATPases' carboxyl termini in the 20S proteasome's alpha ring opens the gate for substrate entry

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

The crystal structure of the human Mov34 MPN domain reveals a metal-free dimer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

The role of mass spectrometry in structure elucidation of dynamic protein complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

TPRpred: a tool for prediction of TPR-, PPR- and SEL1-like repeats from protein sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

hRpn13/ADRM1/GP110 is a novel proteasome subunit that binds the deubiquitinating enzyme, UCH37

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Deubiquitinating enzyme Ubp6 functions noncatalytically to delay proteasomal degradation.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Proteasome recruitment and activation of the Uch37 deubiquitinating enzyme by Adrm1.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Structural organization of the 19S proteasome lid: insights from MS of intact complexes.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

The MPI Bioinformatics Toolkit for protein sequence analysis

5 July 2018

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Crystal structure of the C-terminal domain of S.cerevisiae eIF5.

5 July 2018

1 reference

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Global landscape of protein complexes in the yeast Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Proteome survey reveals modularity of the yeast cell machinery

5 July 2018

1 reference

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High-throughput two-hybrid analysis. The promise and the peril

5 July 2018

1 reference

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AAA proteins: have engine, will work

5 July 2018

1 reference

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Zn2 -induced reversible dissociation of subunit Rpn10/p54 of the Drosophila 26 S proteasome

5 July 2018

1 reference

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The 1.9 A structure of a proteasome-11S activator complex and implications for proteasome-PAN/PA700 interactions.

5 July 2018

1 reference

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ATP hydrolysis-dependent disassembly of the 26S proteasome is part of the catalytic cycle

5 July 2018

1 reference

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Prediction of a common structural scaffold for proteasome lid, COP9-signalosome and eIF3 complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Keepers at the final gates: regulatory complexes and gating of the proteasome channel.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Recombinant ATPases of the yeast 26S proteasome activate protein degradation by the 20S proteasome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Rpn7 Is required for the structural integrity of the 26 S proteasome of Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Phylogenetic analysis of AAA proteins

5 July 2018

1 reference

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The PAM domain, a multi-protein complex-associated module with an all-alpha-helix fold

5 July 2018

1 reference

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Regulation of BRCC, a holoenzyme complex containing BRCA1 and BRCA2, by a signalosome-like subunit and its role in DNA repair

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

A protein interaction map of Drosophila melanogaster

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

From words to literature in structural proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

A cryptic protease couples deubiquitination and degradation by the proteasome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Proteasome subunit Rpn1 binds ubiquitin-like protein domains

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Role of Rpn11 metalloprotease in deubiquitination and degradation by the 26S proteasome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

A proteasomal ATPase subunit recognizes the polyubiquitin degradation signal

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

The ubiquitin-proteasome proteolytic pathway: destruction for the sake of construction

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Subunit interaction maps for the regulatory particle of the 26S proteasome and the COP9 signalosome.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Two-hybrid analysis of the Saccharomyces cerevisiae 26S proteasome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

A protein-protein interaction map of the Caenorhabditis elegans 26S proteasome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Quaternary structure of the ATPase complex of human 26S proteasomes determined by chemical cross-linking

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

A comprehensive two-hybrid analysis to explore the yeast protein interactome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

RPN4 is a ligand, substrate, and transcriptional regulator of the 26S proteasome: a negative feedback circuit

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Identification of two proteins, S14 and UIP1, that interact with UCH37

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

The regulatory complex of Drosophila melanogaster 26S proteasomes. Subunit composition and localization of a deubiquitylating enzyme

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

The 26S proteasome: a molecular machine designed for controlled proteolysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Structural and functional characterization of interaction between hepatitis B virus X protein and the proteasome complex

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Physical association of ubiquitin ligases and the 26S proteasome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Regulatory subunit interactions of the 26S proteasome, a complex problem

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Mapping subunit contacts in the regulatory complex of the 26 S proteasome. S2 and S5b form a tetramer with ATPase subunits S4 and S7

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Protein secondary structure prediction based on position-specific scoring matrices

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

A subcomplex of the proteasome regulatory particle required for ubiquitin-conjugate degradation and related to the COP9-signalosome and eIF3.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Unified nomenclature for subunits of the Saccharomyces cerevisiae proteasome regulatory particle

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

26S proteasome structure revealed by three-dimensional electron microscopy

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

A repetitive sequence in subunits of the 26S proteasome and 20S cyclosome (anaphase-promoting complex).

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Structure of 20S proteasome from yeast at 2.4 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Isolation and characterization of SUG2. A novel ATPase family component of the yeast 26 S proteasome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

The winged-helix DNA-binding motif: another helix-turn-helix takeoff

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Crystal structure of the 20S proteasome from the archaeon T. acidophilum at 3.4 A resolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Predicting coiled coils from protein sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Subunit stoichiometry and three-dimensional arrangement in proteasomes from Thermoplasma acidophilum

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2938054

Uch2/Uch37 is the major deubiquitinating enzyme associated with the 26S proteasome in fission yeast.

5 July 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Inhibition of ubiquitin-mediated proteolysis by the Arabidopsis 26 S protease subunit S5a.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Quantitative profiling of ubiquitylated proteins reveals proteasome substrates and the substrate repertoire influenced by the Rpn10 receptor pathway

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Automated cryoelectron microscopy of "single particles" applied to the 26S proteasome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Subunit-subunit interactions in the human 26S proteasome

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Biochemistry. Nascent proteins caught in the act.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Mts4, a non-ATPase subunit of the 26 S protease in fission yeast is essential for mitosis and interacts directly with the ATPase subunit Mts2.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Large-insert BAC/YAC libraries for selective re-isolation of genomic regions by homologous recombination in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Assembly of the 26S proteasome is regulated by phosphorylation of the p45/Rpt6 ATPase subunit

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Interaction of the anaphase-promoting complex/cyclosome and proteasome protein complexes with multiubiquitin chain-binding proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Nob1p, a new essential protein, associates with the 26S proteasome of growing saccharomyces cerevisiae cells.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Proteasome Involvement in the Repair of DNA Double-Strand Breaks

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Potential artefacts in protein-interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1074/MCP.R000002-MCP201

Specific interactions between ATPase subunits of the 26 S protease

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20467039

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Structure of S5a bound to monoubiquitin provides a model for polyubiquitin recognition

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20467039

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

What curves alpha-solenoids? Evidence for an alpha-helical toroid structure of Rpn1 and Rpn2 proteins of the 26 S proteasome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20467039

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1074/MCP.R000002-MCP201

1 reference

31 July 2017

1 reference

31 July 2017

1 reference