(Q33861598)

29 July 2017

title

Gene ontology analysis for RNA-seq: accounting for selection bias (English)

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29 July 2017

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4

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29 July 2017

Matthew J Wakefield

2

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Gordon K Smyth

object named as

Gordon K Smyth

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3

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author name string

Matthew D Young

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1

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29 July 2017

publication date

4 February 2010

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29 July 2017

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29 July 2017

volume

11

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29 July 2017

issue

2

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29 July 2017

page(s)

R14

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A scaling normalization method for differential expression analysis of RNA-seq data

29 July 2017

cites work

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2872874

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5 July 2018

1 reference

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Large-scale mRNA sequencing determines global regulation of RNA editing during brain development.

5 July 2018

1 reference

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Estimating accuracy of RNA-Seq and microarrays with proteomics

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2872874

Transcript length bias in RNA-seq data confounds systems biology

5 July 2018

1 reference

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Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

5 July 2018

1 reference

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Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2872874

Determination of tag density required for digital transcriptome analysis: application to an androgen-sensitive prostate cancer model

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2872874

Transcriptome-wide identification of novel imprinted genes in neonatal mouse brain

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2872874

Alternative isoform regulation in human tissue transcriptomes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2872874

RNA-seq: an assessment of technical reproducibility and comparison with gene expression arrays

5 July 2018

1 reference

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Mapping and quantifying mammalian transcriptomes by RNA-Seq

5 July 2018

1 reference

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''R"--project for statistical computing

5 July 2018

1 reference

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Moderated statistical tests for assessing differences in tag abundance

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2872874

Small-sample estimation of negative binomial dispersion, with applications to SAGE data

5 July 2018

1 reference

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EasyGO: Gene Ontology-based annotation and functional enrichment analysis tool for agronomical species

5 July 2018

1 reference

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Improved scoring of functional groups from gene expression data by decorrelating GO graph structure

5 July 2018

1 reference

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Gene set enrichment analysis: a knowledge-based approach for interpreting genome-wide expression profiles

5 July 2018

1 reference

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GOToolBox: functional analysis of gene datasets based on Gene Ontology

5 July 2018

1 reference

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GOstat: find statistically overrepresented Gene Ontologies within a group of genes

5 July 2018

1 reference

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GoMiner: a resource for biological interpretation of genomic and proteomic data

5 July 2018

1 reference

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Transcriptional programs activated by exposure of human prostate cancer cells to androgen

5 July 2018

1 reference

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The development of androgen-independent prostate cancer

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2872874

Gene ontology: tool for the unification of biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2872874

Deep sequencing-based expression analysis shows major advances in robustness, resolution and inter-lab portability over five microarray platforms

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2872874

29 October 2018

Identifiers

DOI

10.1186/GB-2010-11-2-R14

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Dimensions Publication ID

29 July 2017

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29 July 2017

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