(Q33516189)

27 July 2017

title

A re-annotation pipeline for Illumina BeadArrays: improving the interpretation of gene expression data (English)

1 reference

27 July 2017

1 reference

Shamith A Samarajiwa

3

0 references

Nuno L Barbosa-Morais

Nuno L Barbosa-Morais

1

0 references

Mark J. Dunning

Mark J Dunning

2

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Matthew E Ritchie

Matthew E Ritchie

5

0 references

Andy G. Lynch

Andy G Lynch

6

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author name string

Jeremy F J Darot

4

1 reference

27 July 2017

Simon Tavaré

7

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27 July 2017

language of work or name

English

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publication date

18 November 2009

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27 July 2017

published in

Nucleic Acids Research

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27 July 2017

volume

38

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27 July 2017

issue

3

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27 July 2017

page(s)

e17

1 reference

describes a project that uses

27 July 2017

limma

1 reference

22 June 2022

https://europepmc.org/article/PMC/2817484

based on heuristic

inferred from PubMed Central ID database lookup

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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14 July 2018

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Hybridization interactions between probesets in short oligo microarrays lead to spurious correlations

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Linear models and empirical bayes methods for assessing differential expression in microarray experiments

14 July 2018

1 reference

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Genome-wide associations of gene expression variation in humans

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Experimental comparison and cross-validation of the Affymetrix and Illumina gene expression analysis platforms

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Empirical establishment of oligonucleotide probe design criteria

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Cis-acting expression quantitative trait loci in mice

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

A sequence-based identification of the genes detected by probesets on the Affymetrix U133 plus 2.0 array

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Quantitative gene expression profiling in formalin-fixed, paraffin-embedded tissues using universal bead arrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Bioconductor: open software development for computational biology and bioinformatics

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Alternative mapping of probes to genes for Affymetrix chips

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Optimization of probe length and the number of probes per gene for optimal microarray analysis of gene expression

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

affy--analysis of Affymetrix GeneChip data at the probe level

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Widespread occurrence of antisense transcription in the human genome

14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

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14 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

BLAT—The BLAST-Like Alignment Tool

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Antisense transcripts in the human genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

Basic local alignment search tool

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2817484

A comparison of Affymetrix gene expression arrays

14 July 2018

1 reference

Crossref

21 January 2018

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Using the iHOP information resource to mine the biomedical literature on genes, proteins, and chemical compounds

21 January 2018

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Crossref

Stochastic models inspired by hybridization theory for short oligonucleotide arrays.

21 January 2018

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Crossref

Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19923232

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/NAR/GKP942

1 reference

27 July 2017

1 reference

27 July 2017

1 reference