(Q33381867)

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Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats

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Europe PubMed Central

PubMed publication ID

26 July 2017

Low-pass shotgun sequencing of the barley genome facilitates rapid identification of genes, conserved non-coding sequences and novel repeats (English)

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Europe PubMed Central

PubMed publication ID

26 July 2017

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Francois Sabot

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Andreas Graner

6

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Nils Stein

8

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Thomas Wicker

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Europe PubMed Central

PubMed publication ID

26 July 2017

7

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Doreen Ware

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

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Apurva Narechania

2

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Europe PubMed Central

PubMed publication ID

26 July 2017

Joshua Stein

4

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Europe PubMed Central

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26 July 2017

Giang T H Vu

5

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Europe PubMed Central

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26 July 2017

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31 October 2008

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Europe PubMed Central

PubMed publication ID

26 July 2017

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Europe PubMed Central

PubMed publication ID

26 July 2017

9

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Europe PubMed Central

PubMed publication ID

26 July 2017

518

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

A new method to compute K-mer frequencies and its application to annotate large repetitive plant genomes

1 reference

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21 June 2018

The impact of next-generation sequencing technology on genetics

1 reference

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21 June 2018

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula

1 reference

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21 June 2018

Genome-wide comparative analysis of copia retrotransposons in Triticeae, rice, and Arabidopsis reveals conserved ancient evolutionary lineages and distinct dynamics of individual copia families

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Global repeat discovery and estimation of genomic copy number in a large, complex genome using a high-throughput 454 sequence survey

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Six-rowed barley originated from a mutation in a homeodomain-leucine zipper I-class homeobox gene

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

454 sequencing put to the test using the complex genome of barley

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Annotation, submission and screening of repetitive elements in Repbase: RepbaseSubmitter and Censor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Origin, evolution and genetic effects of nuclear insertions of organelle DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

ReAS: Recovery of ancestral sequences for transposable elements from the unassembled reads of a whole genome shotgun

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Gene duplication and exon shuffling by helitron-like transposons generate intraspecies diversity in maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

The Genomes of Oryza sativa: a history of duplications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Comparative sequence analysis of the region harboring the hardness locus in barley and its colinear region in rice.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Large retrotransposon derivatives: abundant, conserved but nonautonomous retroelements of barley and related genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

A large rearrangement involving genes and low-copy DNA interrupts the microcollinearity between rice and barley at the Rph7 locus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Positional cloning of the wheat vernalization gene VRN1

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Cereal genes similar to Snf2 define a new subfamily that includes human and mouse genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Intraspecific violation of genetic colinearity and its implications in maize

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

RePS: a sequence assembler that masks exact repeats identified from the shotgun data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Utility and distribution of conserved noncoding sequences in the grasses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

ARACHNE: a whole-genome shotgun assembler

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Artemis: sequence visualization and annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Active conservation of noncoding sequences revealed by three-way species comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Identification of a Coordinate Regulator of Interleukins 4, 13, and 5 by Cross-Species Sequence Comparisons

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Base-Calling of Automated Sequencer Traces UsingPhred. I. Accuracy Assessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Nuclear DNA amounts in angiosperms

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

21 June 2018

Comparison of orthologous loci from small grass genomes Brachypodium and rice: implications for wheat genomics and grass genome annotation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

31 October 2018

Quantification of the retrotransposon BARE-1 reveals the dynamic nature of the barley genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

31 October 2018

A cluster of 11 CBF transcription factors is located at the frost tolerance locus Fr-Am2 in Triticum monococcum

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

31 October 2018

Updating of transposable element annotations from large wheat genomic sequences reveals diverse activities and gene associations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

31 October 2018

Large intraspecific haplotype variability at the Rph7 locus results from rapid and recent divergence in the barley genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

31 October 2018

A detailed look at 7 million years of genome evolution in a 439 kb contiguous sequence at the barley Hv-eIF4E locus: recombination, rearrangements and repeats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

31 October 2018

Sequencing of the Triticum monococcum hardness locus reveals good microcolinearity with rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

31 October 2018

Structural organization of the barley D-hordein locus in comparison with its orthologous regions of wheat genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

31 October 2018

Rapid genome divergence at orthologous low molecular weight glutenin loci of the A and Am genomes of wheat

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

31 October 2018

Analysis of a contiguous 211 kb sequence in diploid wheat (Triticum monococcum L.) reveals multiple mechanisms of genome evolution.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

31 October 2018

Dynamics of tandem repetitive Afa-family sequences in Triticeae, wheat-related species

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584661

31 October 2018

CACTA transposons in Triticeae. A diverse family of high-copy repetitive elements

1 reference

https://pubmed.ncbi.nlm.nih.gov/18976483

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Construction of an RFLP map of barley

1 reference

https://pubmed.ncbi.nlm.nih.gov/18976483

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Morgane, a new LTR retrotransposon group, and its subfamilies in wheats

1 reference

https://pubmed.ncbi.nlm.nih.gov/18976483

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic sequencing reveals gene content, genomic organization, and recombination relationships in barley

1 reference

https://pubmed.ncbi.nlm.nih.gov/18976483

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrotransposon BARE-1 and Its Role in Genome Evolution in the Genus Hordeum

1 reference

https://pubmed.ncbi.nlm.nih.gov/18976483

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transposable elements, genes and recombination in a 215-kb contig from wheat chromosome 5A(m)

1 reference

https://pubmed.ncbi.nlm.nih.gov/18976483

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1186/1471-2164-9-518

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Europe PubMed Central

PubMed publication ID

26 July 2017

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https://scigraph.springernature.com/pub.10.1186/1471-2164-9-518

9 September 2019

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Europe PubMed Central

PubMed publication ID

26 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 July 2017

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