(Q33293733)

25 July 2017

title

Predicting active site residue annotations in the Pfam database (English)

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25 July 2017

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1

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25 July 2017

2

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25 July 2017

Robert D Finn

3

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publication date

9 August 2007

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25 July 2017

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25 July 2017

volume

8

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25 July 2017

page(s)

298

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Creative Commons Attribution 2.0 Generic

25 July 2017

copyright license

start time

9 August 2007

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

1 reference

April 2022 Public Data File from Crossref

cites work

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1 reference

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New developments in the InterPro database

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Rank information: a structure-independent measure of evolutionary trace quality that improves identification of protein functional sites

21 June 2018

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Prediction of catalytic residues using Support Vector Machine with selected protein sequence and structural properties

21 June 2018

1 reference

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SMART 5: domains in the context of genomes and networks

21 June 2018

1 reference

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Pfam: clans, web tools and services

21 June 2018

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21 June 2018

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21 June 2018

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Linking enzyme sequence to function using Conserved Property Difference Locator to identify and annotate positions likely to control specific functionality

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

Predicting functional sites with an automated algorithm suitable for heterogeneous datasets

21 June 2018

1 reference

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21 June 2018

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EFICAz: a comprehensive approach for accurate genome-scale enzyme function inference

21 June 2018

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Prediction of functional sites by analysis of sequence and structure conservation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

The Catalytic Site Atlas: a resource of catalytic sites and residues identified in enzymes using structural data

21 June 2018

1 reference

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ELM server: A new resource for investigating short functional sites in modular eukaryotic proteins

21 June 2018

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Structural bases of stability-function tradeoffs in enzymes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

Prediction of functionally important residues based solely on the computed energetics of protein structure.

21 June 2018

1 reference

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Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.

21 June 2018

1 reference

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Profile hidden Markov models

21 June 2018

1 reference

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Highly specific protein sequence motifs for genome analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

Pfam: a comprehensive database of protein domain families based on seed alignments

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

An evolutionary trace method defines binding surfaces common to protein families

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

Analysis and prediction of the location of catalytic residues in enzymes.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

Looking at enzymes from the inside out: the proximity of catalytic residues to the molecular centroid can be used for detection of active sites and enzyme-ligand interfaces

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

Active site identification through geometry-based and sequence profile-based calculations: burial of catalytic clefts

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

A novel approach to predict active sites of enzyme molecules

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

Distinguishing enzyme structures from non-enzymes without alignments

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

Using a neural network and spatial clustering to predict the location of active sites in enzymes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

Prediction of catalytic residues in enzymes based on known tertiary structure, stability profile, and sequence conservation

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2025603

An Accurate, Sensitive, and Scalable Method to Identify Functional Sites in Protein Structures

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17688688

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Motif-based construction of a functional map for mammalian olfactory receptors

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17688688

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-8-298

1 reference

journals/bmcbi/MistryBF07

25 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

25 July 2017

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