(Q30731518)

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Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: implications for protein evolution in the RNA.

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Europe PubMed Central

PubMed publication ID

26 June 2017

Monophyly of class I aminoacyl tRNA synthetase, USPA, ETFP, photolyase, and PP-ATPase nucleotide-binding domains: implications for protein evolution in the RNA. (English)

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Europe PubMed Central

PubMed publication ID

26 June 2017

protein evolution

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Vivek Anantharaman

2

object named as

Vivek Anantharaman

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object named as

L Aravind

1

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3

object named as

Eugene V Koonin

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Europe PubMed Central

PubMed publication ID

26 June 2017

language of work or name

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publication date

1 July 2002

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Europe PubMed Central

PubMed publication ID

26 June 2017

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Europe PubMed Central

PubMed publication ID

26 June 2017

48

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Europe PubMed Central

PubMed publication ID

26 June 2017

1

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

1-14

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

Sequence similarity analysis of Escherichia coli proteins: functional and evolutionary implications

1 reference

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A minimal gene set for cellular life derived by comparison of complete bacterial genomes

1 reference

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The universal ancestor

1 reference

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Interpreting the universal phylogenetic tree

1 reference

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Genomic evidence for two functionally distinct gene classes.

1 reference

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The COG database: new developments in phylogenetic classification of proteins from complete genomes

1 reference

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Archaea and the Origin(s) of DNA Replication Proteins

1 reference

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Displacement of cellular proteins by functional analogues from plasmids or viruses could explain puzzling phylogenies of many DNA informational proteins

1 reference

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Did DNA replication evolve twice independently?

1 reference

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21 January 2018

Aminoacyl-tRNA synthetases, the genetic code, and the evolutionary process

1 reference

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21 January 2018

The cytidylyltransferase superfamily: identification of the nucleotide-binding site and fold prediction

1 reference

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21 January 2018

Basic local alignment search tool

1 reference

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21 January 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

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IMPALA: matching a protein sequence against a collection of PSI-BLAST-constructed position-specific score matrices

1 reference

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T-Coffee: A novel method for fast and accurate multiple sequence alignment

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A workbench for multiple alignment construction and analysis

1 reference

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Extracting protein alignment models from the sequence database

1 reference

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Prediction of protein secondary structure at better than 70% accuracy

1 reference

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Protein fold recognition by prediction-based threading

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

A fully automatic evolutionary classification of protein folds: Dali Domain Dictionary version 3

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

Surprising similarities in structure comparison

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

Touring protein fold space with Dali/FSSP

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

SCOP: a structural classification of proteins database

1 reference

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CATH--a hierarchic classification of protein domain structures

1 reference

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SWISS‐MODEL and the Swiss‐Pdb Viewer: An environment for comparative protein modeling

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

Aminoacyl-tRNA synthetases

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

Evolution and relatedness in two aminoacyl-tRNA synthetase families

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

Role of lysine-195 in the KMSKS sequence of E. coli tryptophanyl-tRNA synthetase.

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

The crystal structure of E. coli pantothenate synthetase confirms it as a member of the cytidylyltransferase superfamily

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

The crystal structure of a novel bacterial adenylyltransferase reveals half of sites reactivity

1 reference

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21 January 2018

Structure of nicotinamide mononucleotide adenylyltransferase: a key enzyme in NAD( ) biosynthesis

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

A P-loop-like motif in a widespread ATP pyrophosphatase domain: implications for the evolution of sequence motifs and enzyme activity.

1 reference

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21 January 2018

MMDB: 3D structure data in Entrez

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

Structure-based assignment of the biochemical function of a hypothetical protein: a test case of structural genomics

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

Gleaning non-trivial structural, functional and evolutionary information about proteins by iterative database searches

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

Comparison of sequence profiles. Strategies for structural predictions using sequence information

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

Iterated profile searches with PSI-BLAST--a tool for discovery in protein databases

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

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Toprim--a conserved catalytic domain in type IA and II topoisomerases, DnaG-type primases, OLD family nucleases and RecR proteins

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

Electron-transferring flavoprotein has an AMP-binding site in addition to the FAD-binding site.

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

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DNA photolyases and cryptochromes

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

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Crystal structure of Paracoccus denitrificans electron transfer flavoprotein: structural and electrostatic analysis of a conserved flavin binding domain

1 reference

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21 January 2018

Three-dimensional structure of human electron transfer flavoprotein to 2.1-A resolution

1 reference

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21 January 2018

Regulatory potential, phyletic distribution and evolution of ancient, intracellular small-molecule-binding domains.

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

Interaction of the ring finger-related U-box motif of a nuclear dot protein with ubiquitin-conjugating enzymes

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

The crystal structure of GMP synthetase reveals a novel catalytic triad and is a structural paradigm for two enzyme families

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

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The origin of the genetic code

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

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Specific, rapid synthesis of Phe-RNA by RNA.

1 reference

https://api.crossref.org/works/10.1002/PROT.10064

21 January 2018

Identifiers

10.1002/PROT.10064

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

26 June 2017

ResearchGate publication ID

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