(Q30432219)

21 June 2017

title

Patterns of protein-fold usage in eight microbial genomes: a comprehensive structural census (English)

1 reference

21 June 2017

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1

Gerstein M

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21 June 2017

language of work or name

English

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publication date

1 December 1998

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21 June 2017

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21 June 2017

volume

33

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21 June 2017

issue

4

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21 June 2017

page(s)

518-534

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https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

21 June 2017

1 reference

Dinucleotide relative abundance extremes: a genomic signature

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Statistical analyses of counts and distributions of restriction sites in DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Frequent oligonucleotides and peptides of the Haemophilus influenzae genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Sequencing and analysis of bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Gene duplications in H. influenzae.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Genes and proteins of Escherichia coli K-12 (GenProtEC)

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Molecular evidence for an ancient duplication of the entire yeast genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

A structural census of genomes: comparing bacterial, eukaryotic, and archaeal genomes in terms of protein structure

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Conserved clusters of functionally related genes in two bacterial genomes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Ancient conserved regions in new gene sequences and the protein databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

A Genomic Perspective on Protein Families

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Novel protein families in archaean genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

New protein functions in yeast chromosome VIII.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

EcoCyc: an encyclopedia of Escherichia coli genes and metabolism

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

A minimal gene set for cellular life derived by comparison of complete bacterial genomes

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Metabolism and evolution of Haemophilus influenzae deduced from a whole-genome comparison with Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Whole-genome random sequencing and assembly of Haemophilus influenzae Rd

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Comprehensive sequence analysis of the 182 predicted open reading frames of yeast chromosome III.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Fully automated genome analysis that reflects user needs and preferences. A detailed introduction to the MAGPIE system architecture

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Average Core Structures and Variability Measures for Protein Families: Application to the Immunoglobulins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Protein family classification based on searching a database of blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Gene families: the taxonomy of protein paralogs and chimeras

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Modular arrangement of proteins as inferred from analysis of homology.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Pfam: a comprehensive database of protein domain families based on seed alignments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Protein evolution viewed through Escherichia coli protein sequences: introducing the notion of a structural segment of homology, the module.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

The SBASE protein domain library, release 5.0: a collection of annotated protein sequence segments

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

One thousand families for the molecular biologist

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

A structural census of the current population of protein sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Assigning folds to the proteins encoded by the genome of Mycoplasma genitalium

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

How many yeast genes code for membrane-spanning proteins?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Transmembrane helices predicted at 95% accuracy

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

PHD: predicting one-dimensional protein structure by profile-based neural networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

How many membrane proteins are there?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Do transmembrane protein superfolds exist?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

The complete genome sequence of the gastric pathogen Helicobacter pylori

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Genomic sequence of a Lyme disease spirochaete, Borrelia burgdorferi

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Genome‐wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Mapping the protein universe

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Protein superfamilies and domain superfolds

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

LPFC: an Internet library of protein family core structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

A data bank merging related protein structures and sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Database of homology-derived protein structures and the structural meaning of sequence alignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

CATH--a hierarchic classification of protein domain structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Molecular Architecture and Electrostatic Properties of a Bacterial Porin

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Analysis of compositionally biased regions in sequence databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Sequence analysis and recombinant expression of a 28-kilodalton Treponema pallidum subsp. pallidum rare outer membrane protein (Tromp2).

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Protein Data Bank archives of three-dimensional macromolecular structures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Population statistics of protein structures: lessons from structural classifications

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

The multiplicity of domains in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Why are some proteins structures so common?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

The emergence of major cellular processes in evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

The winds of (evolutionary) change: breathing new life into microbiology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Structural patterns in globular proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Characterization of the yeast transcriptome

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Yeast microarrays for genome wide parallel genetic and gene expression analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Exploring the Metabolic and Genetic Control of Gene Expression on a Genomic Scale

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Noncoding DNA, Zipf's law, and language.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Hints of a language in junk DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

How are model protein structures distributed in sequence space?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

SGD: Saccharomyces Genome Database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

The complete genome sequence of Escherichia coli K-12

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Transposable Elements and Genome Organization: A Comprehensive Survey of Retrotransposons Revealed by the Complete Saccharomyces cerevisiae Genome Sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

PDBbrowse--a graphics interface to the Brookhaven Protein Data Bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

SCOP: a Structural Classification of Proteins database

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Analysis of a Bacillus subtilis genome fragment using a co-operative computer system prototype

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Rapid and sensitive protein similarity searches

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Improved tools for biological sequence comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Assessing sequence comparison methods with reliable structurally identified distant evolutionary relationships

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Empirical statistical estimates for sequence similarity searches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Effective protein sequence comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

A unified statistical framework for sequence comparison and structure comparison

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Issues in searching molecular sequence databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Applications and statistics for multiple high-scoring segments in molecular sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Principles of protein-protein interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Detection of conserved segments in proteins: iterative scanning of sequence databases with alignment blocks

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Prediction of protein folding class using global description of amino acid sequence

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Seeking an ancient enzyme in Methanococcus jannaschii using ORF, a program based on predicted secondary structure comparisons

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Selection of representative protein data sets

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Enlarged representative set of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Selection of a representative set of structures from Brookhaven Protein Data Bank

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Non-globular domains in protein sequences: automated segmentation using complexity measures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

The Minimal Gene Complement of Mycoplasma genitalium

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Complete Genome Sequence of the Methanogenic Archaeon, Methanococcus jannaschii

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Complete sequence analysis of the genome of the bacterium Mycoplasma pneumoniae

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Sequence Analysis of the Genome of the Unicellular Cyanobacterium Synechocystis sp. Strain PCC6803. II. Sequence Determination of the Entire Genome and Assignment of Potential Protein-coding Regions

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Emergence of Preferred Structures in a Simple Model of Protein Folding

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Analysis of Protein Domain Families inCaenorhabditis elegans

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Challenging times for bioinformatics

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

From genome sequences to protein function

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

How far can sequences diverge?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

A bug with excess gastric avidity

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Bacterial genome sequence bagged

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

The first genome from the third domain of life

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

The new genomics: global views of biology

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Alignment of the amino acid sequences of distantly related proteins using variable gap penalties

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

Are there dominant membrane protein families with a given number of helices?

21 January 2018

1 reference

https://api.crossref.org/works/10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

10.1002/(SICI)1097-0134(19981201)33:4<518::AID-PROT5>3.0.CO;2-J

21 January 2018

Identifiers

DOI

1 reference

21 June 2017

1 reference