(Q30426879)

21 June 2017

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title

Advances in comparative protein-structure modelling (English)

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21 June 2017

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Sánchez R

1

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21 June 2017

Sali A

series ordinal

2

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21 June 2017

publication date

1 April 1997

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Current Opinion in Structural Biology

21 June 2017

published in

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21 June 2017

volume

7

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21 June 2017

issue

2

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21 June 2017

page(s)

206-214

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Knowledge-Based Protein Modeling

21 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Knowledge-based model building of proteins: concepts and examples

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Modelling mutations and homologous proteins

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Bridging the protein sequence-structure gap by structure predictions

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Comparison of solvent-inaccessible cores of homologous proteins: definitions useful for protein modelling

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A possible three-dimensional structure of bovine α-lactalbumin based on that of hen's egg-white lysozyme

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Comparative model-building of the mammalian serine proteases

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Knowledge-based prediction of protein structures and the design of novel molecules

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A 3D building blocks approach to analyzing and predicting structure of proteins

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Modelling the polypeptide backbone with 'spare parts' from known protein structures

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Accurate modeling of protein conformation by automatic segment matching

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A new method for building protein conformations from sequence alignments with homologues of known structure

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Comparative protein modelling by satisfaction of spatial restraints

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Comparison of systematic search and database methods for constructing segments of protein structure

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Modeling side-chain conformation

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

An algorithm for determining the conformation of polypeptide segments in proteins by systematic search

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Prediction of the folding of short polypeptide segments by uniform conformational sampling

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Predicting antibody hypervariable loop conformations. II: Minimization and molecular dynamics studies of MCPC603 from many randomly generated loop conformations

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Modeling antibody hypervariable loops: a combined algorithm.

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

The predicted structure of immunoglobulin D1.3 and its comparison with the crystal structure

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Structural model of the anti-snake-toxin antibody, M alpha 2,3.

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Prediction of hypervariable CDR-H3 loop structures in antibodies.

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Accuracy and reliability of the scaling-relaxation method for loop closure: an evaluation based on extensive and multiple copy conformational samplings

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Determining protein loop conformation using scaling-relaxation techniques

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Conformational analysis and clustering of short and medium size loops connecting regular secondary structures: a database for modeling and prediction

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A global taxonomy of loops in globular proteins.

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A statistical analysis of side-chain conformations in proteins: comparison with ECEPP predictions

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Efficient rotamer elimination applied to protein side-chains and related spin glasses

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Repacking protein cores with backbone freedom: structure prediction for coiled coils

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Enhanced dead-end elimination in the search for the global minimum energy conformation of a collection of protein side chains

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Finding the global minimum: a fuzzy end elimination implementation

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Side-chain prediction by neural networks and simulated annealing optimization

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Prediction of protein side-chain rotamers from a backbone-dependent rotamer library: a new homology modeling tool

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Testing homology modeling on mutant proteins: predicting structural and thermodynamic effects in the Ala98-->Val mutants of T4 lysozyme

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A structural explanation for the twilight zone of protein sequence homology

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

The use of side-chain packing methods in modeling bacteriophage repressor and cro proteins

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Predicting protein mutant energetics by self-consistent ensemble optimization

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Mean-field minimization methods for biological macromolecules

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Tertiary templates for proteins. Use of packing criteria in the enumeration of allowed sequences for different structural classes

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Application of a self-consistent mean field theory to predict protein side-chains conformation and estimate their conformational entropy

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Rotamers: to be or not to be? An analysis of amino acid side-chain conformations in globular proteins

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

The crystal structure of a mutant protein with altered but improved hydrophobic core packing

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A self consistent mean field approach to simultaneous gap closure and side-chain positioning in homology modelling

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Structural features can be unconserved in proteins with similar folds. An analysis of side-chain to side-chain contacts secondary structure and accessibility.

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Searching protein structure databases has come of age.

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Homology modeling of an immunoglobulin-like domain in the Saccharomyces cerevisiae adhesion protein alpha-agglutinin.

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

ABGEN: A Knowledge-Based Automated Approach for Antibody Structure Modeling

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Protein fold refinement: building models from idealized folds using motif constraints and multiple sequence data

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Homology modelling by distance geometry

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Solution structure of neuronal bungarotoxin determined by two-dimensional NMR spectroscopy: calculation of tertiary structure using systematic homologous model building, dynamical simulated annealing, and restrained molecular dynamics

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Structure of the catalytic region of human complement protease C1s: study by chemical cross-linking and three-dimensional homology modeling

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Structure of recombinant rat UBF by electron image analysis and homology modelling

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A critical assessment of comparative molecular modeling of tertiary structures of proteins

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Evaluation of comparative protein modeling by MODELLER

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Recognition of errors in three-dimensional structures of proteins

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Acuracy of refined protein structures. II. Comparison of four independently refined models of human interleukin 1beta

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Exploring the limits of precision and accuracy of protein structures determined by nuclear magnetic resonance spectroscopy.

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

An assessment of the precision and accuracy of protein structures determined by NMR. Dependence on distance errors

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A mutant T4 lysozyme displays five different crystal conformations

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

One thousand families for the molecular biologist

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Protein superfamilies and domain superfolds

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Mapping the protein universe

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Packaging of proteases and proteoglycans in the granules of mast cells and other hematopoietic cells. A cluster of histidines on mouse mast cell protease 7 regulates its binding to heparin serglycin proteoglycans

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Ligand specificity of brain lipid-binding protein

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Structure-based inhibitor design by using protein models for the development of antiparasitic agents

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Comparison of homology models with the experimental structure of a novel serine protease

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A model for human cytochrome P450 2D6 based on homology modeling and NMR studies of substrate binding

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Xylanase homology modeling using the inverse protein folding approach

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

An approach to protein homology modelling based on an ensemble of NMR structures: application to the Sox-5 HMG-box protein

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Homology modelling of horseradish peroxidase coupled to two-dimensional NMR spectral assignments

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Rational molecular design and genetic engineering of herbicide resistant crops by structure modeling and site-directed mutagenesis of acetohydroxyacid synthase

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Comparison of an antibody model with an X-ray structure: the variable fragment of BR96

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Helmholtz free energies of atom pair interactions in proteins

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Evaluation of atomic level mean force potentials via inverse folding and inverse refinement of protein structures: atomic burial position and pairwise non-bonded interactions

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Monte Carlo simulations of protein folding. II. Application to protein A, ROP, and crambin

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A Structural Basis for Sequence Comparisons

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Optimum superimposition of protein structures: ambiguities and implications

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

The structural alignment between two proteins: is there a unique answer?

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A Method to Identify Protein Sequences That Fold into a Known Three-Dimensional Structure

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A search for the most stable folds of protein chains

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A new approach to protein fold recognition

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Topology fingerprint approach to the inverse protein folding problem

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Structural Diversity in a Family of Homologous Proteins

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Knowledge based modelling of homologous proteins, Part I: Three-dimensional frameworks derived from the simultaneous superposition of multiple structures

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

Prediction of the three-dimensional structures of the biotinylated domain from yeast pyruvate carboxylase and of the lipoylated H-protein from the pea leaf glycine cleavage system: a new automated method for the prediction of protein tertiary struct

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

WHAT IF: a molecular modeling and drug design program

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

A 3-D model for the CD40 ligand predicts that it is a compact trimer similar to the tumor necrosis factors

1 reference

https://api.crossref.org/works/10.1016/S0959-440X(97)80027-9

7 January 2021

10.1016/S0959-440X(97)80027-9

Identifiers

DOI

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21 June 2017

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