(Q24796621)

4 July 2017

title

RIO: analyzing proteomes by automated phylogenomics using resampled inference of orthologs (English)

1 reference

4 July 2017

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1 reference

2

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4 July 2017

Christian M Zmasek

1

1 reference

4 July 2017

language of work or name

English

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publication date

16 May 2002

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4 July 2017

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4 July 2017

volume

3

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4 July 2017

issue

1

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page(s)

14

1 reference

YPD, PombePD and WormPD: model organism volumes of the BioKnowledge library, an integrated resource for protein information

4 July 2017

cites work

1 reference

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7 April 2017

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Perspectives on archaeal diversity, thermophily and monophyly from environmental rRNA sequences

7 April 2017

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

7 April 2017

1 reference

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Amino acid substitution matrices from protein blocks

7 April 2017

1 reference

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

7 April 2017

1 reference

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Basic local alignment search tool

7 April 2017

1 reference

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The Pfam protein families database.

7 April 2017

1 reference

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Profile hidden Markov models

7 April 2017

1 reference

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Genome sequence of the nematode C. elegans: a platform for investigating biology

7 April 2017

1 reference

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D- and L-lactic acid dehydrogenases in Lactobacillus plantarum

7 April 2017

1 reference

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Phylogenomics: Improving Functional Predictions for Uncharacterized Genes by Evolutionary Analysis

7 April 2017

1 reference

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Evolution of the proteases of blood coagulation and fibrinolysis by assembly from modules

7 April 2017

1 reference

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The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.

7 April 2017

1 reference

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Evidence for a clade of nematodes, arthropods and other moulting animals

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Creating the gene ontology resource: design and implementation

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Distinguishing Homologous from Analogous Proteins

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Rapid and sensitive sequence comparison with FASTP and FASTA

7 April 2017

1 reference

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Gene evolution and the haemoglobins.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Automated ortholog inference from phylogenetic trees and calculation of orthology reliability

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Sources of systematic error in functional annotation of genomes: domain rearrangement, non-orthologous gene displacement and operon disruption.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

ATV: display and manipulation of annotated phylogenetic trees

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Chemosensory signaling in C. elegans

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Seven-transmembrane proteins as odorant and chemosensory receptors

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Hox genes in brachiopods and priapulids and protostome evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

The Alcaligenes eutrophus ldh structural gene encodes a novel type of lactate dehydrogenase

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

NADP-malate dehydrogenase: photoactivation in leaves of plants with Calvin cycle photosynthesis

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

A note on the neighbor-joining algorithm of Saitou and Nei.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Enzymic Synthesis of Lignin Precursors. Further Studies on Cinnamyl-Alcohol Dehydrogenase from Soybean-Cell-Suspension Cultures

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

The origin and evolution of protein superfamilies

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

On a Mirkin-Muchnik-Smith Conjecture for Comparing Molecular Phylogenies

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Nucleotide sequence, organization, and nature of the protein products of the carotenoid biosynthesis gene cluster of Rhodobacter capsulatus

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

A simple algorithm to infer gene duplication and speciation events on a gene tree

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Metazoan phylogenies: falling into place or falling to pieces? A palaeontological perspective

28 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=116988

Confidence Limits on Phylogenies: an Approach using the Bootstrap

28 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12028595

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Estimation and interpretation of genetic distance in empirical studies

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/12028595

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-3-14

1 reference

4 July 2017

DBLP publication ID

journals/bmcbi/ZmasekE02

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

1041450232

0 references

PMC publication ID

116988

0 references

1 reference