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SAGA: sequence alignment by genetic algorithm
scientific article
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instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
145823
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json
retrieved
16 October 2019
title
SAGA: sequence alignment by genetic algorithm
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
145823
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json
retrieved
16 October 2019
main subject
sequence alignment
1 reference
based on heuristic
inferred from title
genetic algorithm
1 reference
based on heuristic
inferred from title
author
Cedric Notredame
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
145823
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json
retrieved
16 October 2019
Desmond G. Higgins
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
145823
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json
retrieved
16 October 2019
author name string
C Notredame
series ordinal
1
0 references
D G Higgins
series ordinal
2
0 references
language of work or name
English
0 references
publication date
1 April 1996
1 reference
stated in
Europe PubMed Central
PMC publication ID
145823
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json
retrieved
16 October 2019
published in
Nucleic Acids Research
1 reference
stated in
Europe PubMed Central
PMC publication ID
145823
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json
retrieved
16 October 2019
volume
24
1 reference
stated in
Europe PubMed Central
PMC publication ID
145823
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json
retrieved
16 October 2019
issue
8
1 reference
stated in
Europe PubMed Central
PMC publication ID
145823
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json
retrieved
16 October 2019
page(s)
1515-1524
1 reference
stated in
Europe PubMed Central
PMC publication ID
145823
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json
retrieved
16 October 2019
cites work
CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
24 March 2017
Profile analysis: detection of distantly related proteins
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
24 March 2017
A tool for multiple sequence alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
24 March 2017
Amino acid substitution matrices from protein blocks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
24 March 2017
Multiple sequence alignment using simulated annealing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
24 March 2017
Hidden Markov models in computational biology. Applications to protein modeling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
7 April 2017
Progressive sequence alignment as a prerequisite to correct phylogenetic trees
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
7 April 2017
Rapid and accurate estimates of statistical significance for sequence data base searches
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
27 September 2017
A strategy for the rapid multiple alignment of protein sequences. Confidence levels from tertiary structure comparisons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
27 September 2017
Weights for data related by a tree
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
27 September 2017
Determination of reliable regions in protein sequence alignments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
27 September 2017
Playing with blocks: some pitfalls of forcing multiple alignments
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
27 September 2017
A data bank merging related protein structures and sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
27 September 2017
Improving the practical space and time efficiency of the shortest-paths approach to sum-of-pairs multiple sequence alignment.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
30 May 2018
Improved sensitivity of profile searches through the use of sequence weights and gap excision.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
30 May 2018
A flexible method to align large numbers of biological sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
30 May 2018
MASCOT: multiple alignment system for protein sequences based on three-way dynamic programming.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=145823
retrieved
28 November 2018
Optimal sequence alignment using affine gap costs
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/8628686
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Gap costs for multiple sequence alignment
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/8628686
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/NAR/24.8.1515
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2770653
stated in
Europe PubMed Central
PMC publication ID
145823
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json
retrieved
16 October 2019
OpenCitations bibliographic resource ID
2770653
1 reference
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2770653
PMC publication ID
145823
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2770653
stated in
Europe PubMed Central
PMC publication ID
145823
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json
retrieved
16 October 2019
PubMed publication ID
8628686
2 references
stated in
Consolidated OpenCitations Corpus – April 2017
OpenCitations bibliographic resource ID
2770653
stated in
Europe PubMed Central
PMC publication ID
145823
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:8628686 AND SRC:MED&resulttype=core&format=json
retrieved
16 October 2019
ResearchGate publication ID
14571247
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