(Q21030633)

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

15 December 2024

1

Samuli Lehtonen

Samuli

Lehtonen

1 reference

PubMed

28 July 2022

language of work or name

English

0 references

publication date

2011

0 references

13 October 2011

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:22022365

full work available at URL

15 December 2024

https://journals.plos.org/plosone/article/file?id=10.1371/journal.pone.0024851&type=printable

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:22022365

https://europepmc.org/articles/PMC3192703

15 December 2024

file format

HyperText Markup Language

online access status

open access

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:22022365

https://europepmc.org/articles/PMC3192703?pdf=render

15 December 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC:MED AND EXT_ID:22022365

http://dx.plos.org/10.1371/journal.pone.0024851

15 December 2024

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

15 December 2024

0 references

6

0 references

issue

10

0 references

page(s)

e24851

0 references

copyright license

Creative Commons Attribution 4.0 International

start time

13 October 2011

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

Mega-phylogeny approach for comparative biology: an alternative to supertree and supermatrix approaches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

MUSCLE: multiple sequence alignment with high accuracy and high throughput

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Broad phylogenomic sampling improves resolution of the animal tree of life

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Phylogeny and evolution of ferns (monilophytes) with a focus on the early leptosporangiate divergences

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Missing data and the design of phylogenetic analyses

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Increased taxon sampling greatly reduces phylogenetic error

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

rbcL gene sequences provide evidence for the evolutionary lineages of leptosporangiate ferns

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

The tortoise and the hare II: relative utility of 21 noncoding chloroplast DNA sequences for phylogenetic analysis

19 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Phylogenomics of eukaryotes: impact of missing data on large alignments

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Molecular Species Identification with Rich Floristic Sampling: DNA Barcoding the Pteridophyte Flora of Japan

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Sparse supermatrices for phylogenetic inference: taxonomy, alignment, rogue taxa, and the phylogeny of living turtles

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

The Ascomycota tree of life: a phylum-wide phylogeny clarifies the origin and evolution of fundamental reproductive and ecological traits

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

The PhyLoTA Browser: processing GenBank for molecular phylogenetics research

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Polyphyly of the fern family Tectariaceae sensu Ching: insights from cpDNA sequence data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

A molecular phylogeny of the fern family Pteridaceae: assessing overall relationships and the affinities of previously unsampled genera

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

The supermatrix approach to systematics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Prospects for building the tree of life from large sequence databases

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Tracing the decay of the historical signal in biological sequence data

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Missing data, incomplete taxa, and phylogenetic accuracy

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

First insights into fern matK phylogeny.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Phylogenetic studies of Ophioglossaceae: evidence from rbcL and trnL-F plastid DNA sequences and morphology

27 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Fern Phylogeny Based on rbcL Nucleotide Sequences

30 May 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Phylogenetic Relationships of Extant Ferns Based on Evidence from Morphology and rbcL Sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

A linear sequence of extant families and genera of lycophytes and ferns

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Inconsistencies in arguments for the supertree approach: supermatrices versus supertrees of Crocodylia

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Phylogenetic supermatrix analysis of GenBank sequences from 2228 papilionoid legumes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Phylogenetic analysis of 73 060 taxa corroborates major eukaryotic groups

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Fern Phylogeny Inferred from 400 Leptosporangiate Species and Three Plastid Genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Plastid atpA Data Provide Improved Support for Deep Relationships among Ferns

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Phylogenetics and classification of the pantropical fern family Lindsaeaceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

A Classification for Extant Ferns

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Phylogeny and generic taxonomy of the New Zealand Pteridaceae ferns from chloroplastrbcL DNA sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Phylogenetic Analyses of rbcL and Nuclear Ribosomal RNA Gene Sequences in Dennstaedtiaceae

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

How Does the Inclusion of Fossil Data Change Our Conclusions about the Phylogenetic History of Euphyllophytes?

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

A review of long-branch attraction

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

The problem of rooting rapid radiations

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Improved bootstrap confidence limits in large-scale phylogenies, with an example from Neo-Astragalus (Leguminosae).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Phylogenetic relationships of dennstaedtioid ferns: evidence from rbcL sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

TNT, a free program for phylogenetic analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

The Parsimony Ratchet, a New Method for Rapid Parsimony Analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Taxonomic misidentification in public DNA databases

21 January 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Evaluation of atpB nucleotide sequences for phylogenetic studies of ferns and other pteridophytes

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3192703

Preserving Accuracy in GenBank

29 November 2018

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Phylogeny of the lady fern group, tribe Physematieae (Dryopteridaceae), based on chloroplast rbcL gene sequences

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22022365

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Amplification of noncoding chloroplast DNA for phylogenetic studies in lycophytes and monilophytes with a comparative example of relative phylogenetic utility from Ophioglossaceae

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/22022365

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

inferred from DOI database lookup

7 January 2021

based on heuristic

Phylogenetic Relationships among Pteridaceae, including Brazilian Species, Inferred from rbcL Sequences

series ordinal

25

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

Testing for Phylogenetic Conflict Among Molecular Data Sets in the Tribe Triticeae (Gramineae)

15 December 2024

series ordinal

59

1 reference

https://api.crossref.org/works/10.1371/JOURNAL.PONE.0024851

15 December 2024

Identifiers

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22022365

15 December 2024

0 references

1 reference

National Center for Biotechnology Information

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=22022365

15 December 2024

1 reference

National Center for Biotechnology Information