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› Parser implementations | Science › Biology › Exon
#bioinformatics #file-format #sdf #object-storage #exon #proteomics #multi-language

exon-sdf

Exon SDF

by Trent Hauck and 2 contributors

11 releases (4 breaking)

0.32.4 Dec 21, 2024
0.32.3 Dec 15, 2024
0.32.2 Sep 4, 2024
0.31.0 Aug 17, 2024
0.28.1 Jul 15, 2024

#634 in Parser implementations

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Used in exon

Apache-2.0

1.5MB
904 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~68MB
~1.5M SLoC