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#bed #bioinformatics #object-storage #exon #file-format #primitive #arrow

exon-bed

Subcrate of the exon crate for working with BED files

by Trent Hauck and 2 contributors

65 releases (29 breaking)

0.32.4 Dec 21, 2024
0.32.2 Sep 4, 2024
0.29.1 Jul 16, 2024
0.15.0 Mar 27, 2024
0.5.3 Nov 29, 2023

#364 in Biology

Download history 89/week @ 2024-09-24 28/week @ 2024-10-01 4/week @ 2024-10-08 8/week @ 2024-10-29 2/week @ 2024-11-05 19/week @ 2024-11-19 5/week @ 2024-12-03 299/week @ 2024-12-10 244/week @ 2024-12-17 23/week @ 2024-12-24 2/week @ 2025-01-07

290 downloads per month
Used in 4 crates (via exon)

Apache-2.0

42KB
733 lines

Exon

Exon is an execution engine designed to work with bioinformatics data. It features:

  • SQL based access to bioinformatics data -- general DML and some DDL support
  • Support for many file formats from bioinformatics, proteomics, and others
  • Local filesystem and object storage support
  • Arrow FFI primitives for multi-language support

Installation

Exon is available via crates.io. To install, run:

cargo add exon

Documentation

  • Rust documentation is available here.
  • General documentation is available here.

Benchmarks

Please see the benchmarks README for more information.

Dependencies

~69MB
~1.5M SLoC