A tool for visualising kmers in 2D space.

kmer based single-nucleotide polymorphism analysis

Better Alignments with Translated HMMER

Nail is an Alignment Inference tooL

[EMNLP 2022] This repository contains the official implementation of the paper "MM-Align: Learning Optimal Transport-based Alignment Dynamics for Fast and Accurate Inference on Missing Modality Seq…

Off-Policy Evaluation and Learning that is both Doubly Robust and Distributionally Robust.

Miniprothint selects a set of reliable gene prediction hints from miniprot alignments scored by miniprot boundary scorer.

polyApipe

ExOrthist: a pipeline to extract exon orthologies at any evolutionary distance.

MT3: Multi-Task Multitrack Music Transcription

Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species

spVC for the detection and interpretation of spatial gene expression variation

The code for "scDisco: Integration of scRNA-seq Data by Disentangled Representation Learning with Condition Domain Adaptation".

R toolkit for inference and analysis of pathway-mediated cell-cell communication chain from single-cell transcriptomics

Bilirubin reductase bioinformatics analysis scripts

Lightweight Alignment Based Resolution of Alternative Three Prime Ends

Evaluating genome assemblies

An automatic web tool for phylogenetic inference of animal/palnt orthogroups under purposeful taxonomic sampling

抓取网络文章到github issues保存

Detect alternative 3' UTR in plants using RNA-seq data

Alternative polyadenylation detection from diverse data sources such as 3'-seq, long-read and short-reads.

APA Regression Net - Predict and Engineer Alternative Polyadenylation

Step finding based HMM

RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et…

A hierarchical deep learning framework for ncRNA-protein interaction prediction.