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[ENH] Allow pediatric bundledict and template to be accessed from config file. #923

Merged

arokem merged 2 commits into yeatmanlab:master from 36000:pediatric_default

Nov 1, 2022

Collaborator

36000 commented Nov 1, 2022

Here is an example of such a config file:

[BIDS_PARAMS]
bids_path = "example_bids_subject"
preproc_pipeline = "vistasoft"

[DATA]
reg_template_spec = "pediatric"
reg_subject_spec = "b0"
bundle_info="PediatricBundleDict()"

[TRACTOGRAPHY_PARAMS]
import_tract = "{'suffix': 'tractography', 'scope': 'mrtrix'}"

[SEGMENTATION_PARAMS]
filter_by_endpoints = false

[CLEANING_PARAMS]
distance_threshold = 4

36000 added 2 commits

October 31, 2022 11:49


[ENH] Add pediatric template as potential default

3f9204d


allow bundledicts from toml

db2b00e

Collaborator

arokem commented Nov 1, 2022

I assume you need this soon-ish, so I will go ahead and merge and we can deal with any side effects later.

arokem merged commit 6f97f0e into yeatmanlab:master

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