Merge remote-tracking branch 'origin/main' into ie

xzackli · Aug 13, 2024 · 06fcf12 · 06fcf12
2 parents 1e8f959 674271b
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diff --git a/.gitattributes b/.gitattributes
@@ -0,0  1,3 @@
 *.ipynb filter=nbstripout
 *.zpln filter=nbstripout
 *.ipynb diff=ipynb
diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml
@@ -4,30  4,22 @@ on:
   - pull_request
 jobs:
   test:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
     name: Julia ${{ matrix.version }} - ${{ github.event_name }}
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
       matrix:
         version:
-          - '1.5'
-          - 'nightly'
           # - '1.5'
           - '1.6'
           - '1.10'
         os:
           - ubuntu-latest
-          - macOS-latest
-          - windows-latest
-        arch:
-          - x64
-          - x86
-        exclude:
-          - os: macOS-latest
-            arch: x86
     steps:
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@v1
         with:
           version: ${{ matrix.version }}
-          arch: ${{ matrix.arch }}
       - uses: actions/cache@v1
         env:
           cache-name: cache-artifacts
@@ -51,18  43,12 @@ jobs:
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@v1
         with:
-          version: '1'
-      - run: |
-          julia --project=docs -e '
-            using Pkg
-            Pkg.develop(PackageSpec(path=pwd()))
-            Pkg.instantiate()'
-      - run: |
-          julia --project=docs -e '
-            using Documenter: doctest
-            using Bolt
-            doctest(Bolt)'
-      - run: julia --project=docs docs/make.jl
           version: '1.7'
       - run: >
           sudo apt-get install --no-install-recommends python3-pip
           && pip3 install jupytext
       - run: julia --project=docs -e "using Pkg; Pkg.instantiate()"
       - run: julia --threads=auto --project=docs docs/make.jl
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }}
diff --git a/.gitignore b/.gitignore
@@ -3,4  3,8 @@
 *.jl.mem
 /docs/build/
 .vscode
-Manifest.toml
 /Manifest.toml
 .ipynb_checkpoints
 test/Manifest.toml
 examples/Manifest.toml
 .DS_Store
diff --git a/Project.toml b/Project.toml
@@ -7,16  7,20 @@ version = "0.1.0"
 AbstractFFTs = "621f4979-c628-5d54-868e-fcf4e3e8185c"
 BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
 DSP = "717857b8-e6f2-59f4-9121-6e50c889abd2"
 Bessels = "0e736298-9ec6-45e8-9647-e4fc86a2fe38"
 DataStructures = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8"
 DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5"
 DoubleFloats = "497a8b3b-efae-58df-a0af-a86822472b78"
 FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
 FastGaussQuadrature = "442a2c76-b920-505d-bb47-c5924d526838"
 ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
 HypergeometricFunctions = "34004b35-14d8-5ef3-9330-4cdb6864b03a"
 Interpolations = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59"
 LaTeXStrings = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
-NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56"
 MuladdMacro = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221"
 NaturallyUnitful = "872cf16e-200e-11e9-2cdf-8bb39cfbec41"
 NonlinearSolve = "8913a72c-1f9b-4ce2-8d82-65094dcecaec"
 NumericalIntegration = "e7bfaba1-d571-5449-8927-abc22e82249b"
 OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
 OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed"
@@ -26,14  30,15 @@ Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
 QuadGK = "1fd47b50-473d-5c70-9696-f719f8f3bcdc"
 Revise = "295af30f-e4ad-537b-8983-00126c2a3abe"
 SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b"
 StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 ThreadPools = "b189fb0b-2eb5-4ed4-bc0c-d34c51242431"
 UnPack = "3a884ed6-31ef-47d7-9d2a-63182c4928ed"
 Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d"
 UnitfulAstro = "6112ee07-acf9-5e0f-b108-d242c714bf9f"
 UnitfulCosmo = "961331e1-62bb-46d9-b9e3-f058129f1391"
 
 [extras]
-DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 
 [targets]
-test = ["Test", "DelimitedFiles"]
 test = ["Test"]
diff --git a/README.md b/README.md
@@ -1,23  1,30 @@
 # Bolt
 
-<!-- [![Stable](https://img.shields.io/badge/docs-stable-blue.svg)](https://xzackli.github.io/Bolt.jl/stable) -->
 [![Dev](https://img.shields.io/badge/docs-dev-blue.svg)](https://xzackli.github.io/Bolt.jl/dev)
 [![](https://img.shields.io/badge/source-github-blue)](https://github.com/xzackli/Bolt.jl) 
 [![DOI](https://zenodo.org/badge/328298090.svg)](https://zenodo.org/doi/10.5281/zenodo.10065125)
 
 [![Build Status](https://github.com/xzackli/Bolt.jl/workflows/CI/badge.svg)](https://github.com/xzackli/Bolt.jl/actions)
 [![codecov](https://codecov.io/gh/xzackli/Bolt.jl/branch/main/graph/badge.svg?token=NDj9hvOUkN)](https://codecov.io/gh/xzackli/Bolt.jl)
 
 ⚡ Bolt is a pure-Julia integrator for the Boltzmann equations in cosmology. It can accurately compute the gradient of the CMB power spectrum, with respect to cosmological parameters, using forward-mode automatic differentiation.
 
-**Authors**: Jamie Sullivan, Zack Li
 **Contributors**: Jamie Sullivan, Zack Li, Marius Millea
 
-<p align="center">
-<img width=80% src="docs/assets/example_spectrum.png">
-</p>
 ## Install
 
-*A CMB temperature power spectrum and gradient from Bolt.jl.*
 Bolt requires Julia 1.5 . To install, from the package prompt, run:
 
 ```
 pkg> add https://github.com/xzackli/Bolt.jl
 ```
 
-<p align="center">
-<img width=80% src="docs/assets/example_linear_power_c.png">
-</p>
 ## Gallery
 
 *A CMB temperature power spectrum and gradient from Bolt.jl.*
 ![](example_spectrum.png) ![](docs/src/example_spectrum.png)
 
 *A linear matter power spectrum and gradient from Bolt.jl.*
 ![](example_linear_power_c.png) ![](docs/src/example_linear_power_c.png)