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Type Less, Plot More. Create (scientific) plots with very little code and write (markdown) reports easily from your R scripts
Granular Functional Filtering (Gruffi) to isolate stressed cells
Seurat meets tidyverse. The best of both worlds.
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
Implementation of the matrixStats API for sparse matrices
Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
mrdwab / overflow-mrdwab
Forked from sebastian-c/overflowAn R package to assist people answering R questions on Stack Overflow
Multicore and utility functions for Seurat 2 & 3, using doMC / foreach packages.
A collection of custom R functions. Works with MarkdownReports, SeuratUtils but also as a standalone set of more than 200 productivity tools.
R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data
This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data
A contextual menu plugin & service for macOS that allows users to make symbolic links in the Finder
🐟 🍣 🍱 Highly-accurate & wicked fast transcript-level quantification from RNA-seq reads using selective alignment
R implementation of MULTI-seq sample classification workflow
main repo: https://github.com/ucscGenomeBrowser/cellBrowser/ - Python pipeline and Javascript scatter plot library for single-cell datasets, http://cellbrowser.rtfd.org
R package for detecting doublets in single-cell RNA sequencing data
📖 A collection of pure bash alternatives to external processes.
Haplotype, isoform and gene level expression analysis using multi-mapping RNA-seq reads
Bugs, suggestions or free discussions about the minimal markdown editor — Typora
Preprocessor for Markdown files to generate a table of contents and other documentation needs