-
IMBA - Institute of Molecular Biotechnology
- Vienna, AT
- https://vertesy.github.io/
- @vertesy
- in/abelvertesy
Highlights
- Pro
-
ggExpress Public
ggExpress is the fastest way to create, annotate and and save plots in R.
-
Seurat.utils Public
Various utility functions for Seurat single-cell analysis
-
Stringendo Public
String parsing functionalites for generating plotnames, filenames and path. Used by MarkdownReprots and ggExpress
-
Seurat.Pipeline Public
Seurat Pipeline using the Seurat.utils package
-
DatabaseLinke.R Public
A set of functions to parse and open (search query) links to genomics related and other websites for R. Useful when you want to explore e.g.: the function of a set of differentially expressed genes.
R MIT License UpdatedSep 5, 2024 -
MarkdownReports Public
Type Less, Plot More. Create (scientific) plots with very little code and write (markdown) reports easily from your R scripts
-
isoENV Public
Tools to work with isolated environments for in-memory pipelines in R.
R GNU General Public License v3.0 UpdatedSep 5, 2024 -
Rocinante Public
A collection of custom R functions. Helper functions complementing CodeAndRoll2.
-
CodeAndRoll2 Public
A set of more than >130 productivity functions: vector, matrix, list manipulations and math. Used by MarkdownReports, ggExpress, SeuratUtils, etc.
-
ReadWriter Public
Functions to read and write tabular data files conveniently. Complements CodeAndRoll2.
R GNU General Public License v3.0 UpdatedJul 24, 2024 -
MarkdownHelpers Public
Helper functions (control and parsing) for MarkdownReports and ggExpress
R GNU General Public License v3.0 UpdatedJun 12, 2024 -
-
PackageTools Public
Functions and wrappers to manage R packages (creation, documentation, dependencies, checks).
HTML GNU General Public License v3.0 UpdatedJun 5, 2024 -
DataInCode Public
Store (smaller) data objects in your R code - make your script fully reproducable yet easily sharable.
R MIT License UpdatedNov 27, 2023 -
slighshot.utils Public
[Archived] Utility functions for slignshot pseudotime prediction tool for single-cell RNAseq analysis.
GNU General Public License v3.0 UpdatedNov 13, 2023 -
Analysis for Vertesy et al., "Gruffi removes stressed cells from brain organoid datasets"
-
ACM.TomoSeq Public
Analysis scripts for the manuscript: "Spatial transcriptomics unveils ZBTB11 as a regulator of cardiomyocyte degeneration in arrhythmogenic cardiomyopathy".
R GNU General Public License v3.0 UpdatedJan 27, 2022 -
-
RoxygenReady Public
Prepare your R function library to be compiled into an R package by Roxygen
-
MarkdownReportsDev Public
MarkdownReports Development repo for v4 . See "MarkdownReports" repo for v3.1.1 (stable)
-
Seurat.multicore Public
Multicore and utility functions for Seurat 2 & 3, using doMC / foreach packages.
-
CodeAndRoll Public
A collection of custom R functions. Works with MarkdownReports, SeuratUtils but also as a standalone set of more than 200 productivity tools.
-
Seurat.CBE.issues Public
Issue tracker repo for running Seurat on CLIP/CBE
-
Template Public template
This is a template repo
GNU General Public License v3.0 UpdatedDec 9, 2020 -
InterNeuronMigration Public
The single-cell analysis code for Bajaj 2020
GNU General Public License v3.0 UpdatedDec 1, 2020 -
single-cell-sequencing Public
Forked from MauroJM/single-cell-sequencingscripts and functions to analyse single-cell sequencing data
R UpdatedNov 13, 2020 -
pseudoBulk Public
Cluster-specific pseudo-bulk analysis of 10X single-cell RNA-seq data by connecting Seurat to the VBC RNA-seq pipeline.
-
Analysis scripts for the Ebbing et manuscript: "Spatially-resolved transcriptomics in C. elegans identifies sex-specific differences in gene expression patterns"
-
Kinetochore Public
Analysis scripts for the manuscript "Spindle checkpoint silencing at kinetochores at submaximal microtubule occupancy" by Etemad et al. "
R GNU General Public License v3.0 UpdatedJun 19, 2019 -
Single-Cell-Omics-Course Public
A summer workshop on single-cell (gen)omics and data analysis
HTML GNU General Public License v2.0 UpdatedAug 17, 2018