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tumor-microbiome Public
A pan-cancer analysis of the microbiome in metastatic cancer (Battaglia et. al, Cell, 2024)
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MicrobeDS Public
A repository for large-scale microbiome datasets, formatted for phyloseq
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HANSolo-manuscript Public
Identification of patient-specific T cell neoantigens through HLA-agnostic genetic screens (Cattaneo et al, Nature Biotechnology, 2023)
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oncology-packages Public
Repo for storing links for interesting cancer bioinformatics packages
UpdatedFeb 22, 2022 -
conda-menu Public
An (unofficial) menubar app for creating and launching conda virtual environments.
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cookiecutter-rnaseq Public
A cookiecutter implementation of the RNAseq workflow described in https://github.com/twbattaglia/RNAseq-workflow
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btools Public
A set of R functions that help faciliate a lot of tedious processing
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sci2017_analysis Public
Forked from cribioinfo/sci2017_analysisData and analysis scripts for Matson et al. 2017 manuscript
Jupyter Notebook Apache License 2.0 UpdatedJan 5, 2018 -
RNAseq-workflow Public
A repository for setting up a RNAseq workflow
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MultiQC Public
Forked from MultiQC/MultiQCAggregate results from bioinformatics analyses across many samples into a single report.
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koeken Public
A Linear Discriminant Analysis Effect Size (LEfSe) wrapper.
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btools-shiny Public
A shiny interactive dashboard for 16s microbial data analysis
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q2-summarizer Public
QIIME2 plugin for generating interactive summary data