PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its API, while supporting pandas, VCF file formats, and HGVS parsing
-
Updated
Aug 30, 2024 - Python
PyGeneBe: A Python client seamlessly integrating with the GeneBe platform, offering efficient annotation of genetic variants through its API, while supporting pandas, VCF file formats, and HGVS parsing
Pipeline for variant annotation using Variant Effect Predictor (VEP)
Annotation pipeline for HPDS
Pipeline para Anotação de Arquivo VCF de Variantes Somáticas utilizando o Ensembl Variant Effect Predictor (VEP) version 105.0 via Google Colab. O SAVEP_v01.2022 é de código aberto e está disponível no GitHub.
BEstimate, a Python module that systematically analyses guide RNA (gRNA) targetable sites across given sequences for given Base Editors, and functional and clinical effects of the potential edits on the resulting proteins.
Ensembl VEP plugin that generates HGVS notation for Short Tandem Repeats (STR)
Add a description, image, and links to the vep-annotation topic page so that developers can more easily learn about it.
To associate your repository with the vep-annotation topic, visit your repo's landing page and select "manage topics."