Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis

Learning the Variant Call Format

BioC Input/Output library

Checks vcf files and removes loci and samples with too many missings, can also input genotypes in missing (various options for this).

A command-line parser for VCF files designed for population genetics analyses.

Modify KASP assay calls to a VCF format

Convert an standard VCF to JSON format