opencobra / cobrapy Star 461 Code Issues Pull requests Discussions COBRApy is a package for constraint-based modeling of metabolic networks. python flux bioinformatics modeling systems-biology computational-biology biochemistry metabolism cobra metabolic-models sbml metabolic-network cell-design strain-engineering sbml-model sbml-simulation Updated Sep 19, 2024 Python
opencobra / cobratoolbox Star 247 Code Issues Pull requests The COnstraint-Based Reconstruction and Analysis Toolbox. Documentation: tutorial metabolomics reconstruction transcriptomics cobra metabolic-models strain-engineering metabolic-reconstruction constraint-based-modeling microbiome-analysis metabolic-engineering gap-filling cobra-toolbox omics-data-integration human-metabolism Updated Sep 28, 2024 MATLAB
klamt-lab / straindesign Star 35 Code Issues Pull requests StrainDesign is a python package for the computational design of metabolic networks and based on COBRApy python bioinformatics systems-biology computational-biology milp mcs cobrapy strain-engineering strain-design optknock optcouple robustknock flux-space Updated Sep 27, 2024 Python