DNABERT: pre-trained Bidirectional Encoder Representations from Transformers model for DNA-language in genome

Library of autoencoders for sequential data

Bioconvert is a collaborative project to facilitate the interconversion of life science data from one format to another.

Repository for the tutorial on Sequence-Aware Recommender Systems held at TheWebConf 2019 and ACM RecSys 2018

Unified biological sequence manipulation in Python

🍊 📈 Orange add-on for analyzing, visualizing, manipulating, and forecasting time series data.

Package for finding difference between two input sequences with ability to detect sequence elements displacements.

PyGrinder: a Python toolkit for grinding data beans into the incomplete for real-world data simulation by introducing missing values with different missingness patterns, including MCAR (complete at random), MAR (at random), MNAR (not at random), sub sequence missing, and block missing

Scripts for working with electribe 2.

LSTM Mobility Model implementation using Tensorflow

ANSI escape codes for manipulating the terminal - A Python port of sindresorhus's ansi-escapes Node.js module

ProtFeat is protein feature extraction tool that utilizes POSSUM and iFeature.

Previz Camera Tools for Blender

A python script to load and automatically fit pre-sliced gcode onto the build plate of an FDM 3D printer

Explore and analyze biological sequence data

This program dereplicates and/or filter nucleotide and/or protein database from a list of names or sequences (by exact match).

A package and tools for Unity to stream large Pointcloud and Mesh frame sequences from disk

A tool to generate image dataset for sequences of handwritten digits using MNIST database

De Bruijn Sequence WAV File Generator for the HackRF

USUM: Plotting sequence similarity using USEARCH & UMAP & t-SNE