relative-abundances

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Russel88 / DAtest

Compare different differential abundance and expression methods

metagenomics rnaseq auc proteomics metabolomics microbiome false-positive-control differential-expression 16s otu marker-gene-analysis relative-abundances compare-methods differential-abundance-methods

Updated Mar 8, 2022
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RawHash can accurately and efficiently map raw nanopore signals to reference genomes of varying sizes (e.g., from viral to a human genomes) in real-time without basecalling. Described by Firtina et al. (published at https://academic.oup.com/bioinformatics/article/39/Supplement_1/i297/7210440).

bioinformatics nanopore seeding segmentation event-detection genome-analysis hash-tables contamination read-mapping relative-abundances nanopore-sequencing nanopore-analysis-pipeline nanopore-reads nanopore-data nanopore-minion raw-signal rawhash raw-nanopore-signal-analysis

Updated Oct 24, 2024
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jaeyunsung / GMHI_2020

Star

Scripts for reproducing results shown in Gupta VK et al. "A Predictive Index for Health Status using Species-level Gut Microbiome Profiling". Nature Communications, 2020. https://doi.org/10.1038/s41467-020-18476-8.

gut-microbiome relative-abundances stool-metagenome metagenome-samples health-scarce-species