Compare different differential abundance and expression methods

An HMM and Phylogenetic Placement based Ultra-Fast Taxonomy Assignment Tool for 16S sequencing

Reference-based, heuristic algorithm for identification of potential contaminants in mothur-formatted OTU tables

OTU co-occurrence network inferrence base on null model for HPC

Building an interactive dashboard to explore the Belly Button Biodiversity dataset using JavaScript, D3, Plotly, HTML and CSS.

This bash script is used to generate a one page KRONA html from a rarified multi samples OTU table.

PAAT uses phylogenetic trees to refine differential abundance signals

R workflows used to analyze microbial community sequence data

OTUStalker is a small software tool designed to be compatible with QIIME (v1.8.0). Its purpose is to retrieve data pertinent to a single taxonomic group, from a larger (presumably mixed) data set, therefore allowing the user to concentrate their efforts on the specific taxa of interest. In effect, OTUStalker is taking the place of a targeted PCR…