MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes

mgatk: mitochondrial genome analysis toolkit

MFannot is a program for the annotation of mitochondrial and plastid genomes

Organelle Genome Assembler

Mitochondrial DNA sequence assembly and annotation for nematodes using NGS data.

Sample size and power for association studies involving mitochondrial DNA haplogroups -

get chloroplast and mitochondrial genes from contigs of genome-skimming or transcriptome data

Mitochondrial Long-read Iterative Assembly

This repository contains the codes and additional data utilized in the benchmark study of short read based mitochondrial assemblers for human datasets

PrecisionCallerPipeline (PCP) automatically takes Precision ID mtDNA Whole Genome Panel (Thermo Fisher Scientific, USA) FASTQ files and outputs BAM files correctly aligned to the rCRS.

RNA-Seq analysis for "Mitochondrial DNA Variation Dictates Expressivity and Progression of Nuclear DNA Mutations Causing Cardiomyopathy"

Analysis of rare disease patients with ATG7 mutations