🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.

Comparison of Adaptive Immune Receptor Repertoires

Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.

BASIC: BCR and TCR assembly from single cell RNA-seq

Comparison of gene usage in immune repertoires under different biological conditions

Suit of statistical procedures for robust quantification of various BCR and TCR repertoire properties

Siamese network-based metric learning for dimensionality reduction and visualization

Immunogenomics of pediatric nervous system tumours

Limitations of machine learning models for specificity prediction of T-cell receptor sequences