pirovc / multitax Star 40 Code Issues Pull requests Python package to obtain, parse and explore biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT) python taxonomies tree bioinformatics taxonomy ncbi ott silva greengenes gtdb pyhton-library open-tree-taxonomy biological-taxonomies Updated Sep 6, 2024 Python
glickmac / OTU_Groupings Star 0 Code Issues Pull requests workflow microbiome qiime merging silva biom otus greengenes Updated Nov 21, 2017 Shell
mmtechslv / taxamatcher Star 0 Code Issues Pull requests Correlates target taxonomy(i.e consensus lineages) with a reference taxonomy such as Greengenes, SILVA, etc. bioinformatics taxonomy metagenomics lineage taxonomy-assignment silva taxonomic-classification taxon taxa greengenes Updated Mar 16, 2021 Python
mmtechslv / PhyloMAF Star 0 Code Issues Pull requests Next Generation Phylogenetic Microbiome Analysis Framework bioinformatics taxonomy phylogenetic-trees phylogenetics microbiome ott taxonomy-assignment silva microbiome-analysis taxonomic-classification otu-table greengenes 16s-rrna Updated Apr 23, 2022 Python