Amplicon sequence processing workflow using QIIME 2 and Snakemake
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Updated
Aug 14, 2024 - Python
Amplicon sequence processing workflow using QIIME 2 and Snakemake
16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Demo: https://ycl6.github.io/16S-Demo/
Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat
Microbiome Analysis Using R Workshop originally organized for the 2018 ASM General Meeting in Atlanta, GA, but regularly updated since.
Dadaist2 🟨 Highway to R
Collection of notebooks describing the basic analysis workflow for a 16S rRNA gene amplicon sequencing project
Processing NEON soil microbe marker gene sequence data into ASV tables.
Working Demo on 16S rDNA V3-V4 amplicon sequencing analysis using dada2, phyloseq, LEfSe, picrust2 and other tools. Visit repo website for HTML output
A pipeline to analyse marine fish amplicon data
Qiime2 and DADA2 are one of the latest bioinformatics tools used in 16S RNA analysis. The current Qiime2 and DADA2 pipelines support End to End 16S RNA analysis, among other analyses.
🌊 16S rRNA microbiome data analysis workflow using DADA2 and R on a high performance cluster using SLURM
A quick and user-friendly pipeline to go from raw fastq data from Illumina (paired-end sequencing) to processed ASVs and Taxonomic data.
Bioinformatic data analysis scripts and pipelines
A workflow for processing CCS reads of AMF to ASVs using DADA2
En este repositorio se encuentran todos los scripts utilizados para mi tesis de licenciatura, titulada: "Análisis de perfiles funcionales de la microbiota intestinal de pacientes con trastorno depresivo mayor", la cual utiliza un lenguaje de programación en R y Phyton.
Accurate sample inference from amplicon data with single nucleotide resolution
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