(Meta-)genome screening for functional and natural product gene sequences
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Updated
Sep 1, 2024 - Nextflow
(Meta-)genome screening for functional and natural product gene sequences
zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)
lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
The Functional Order (FunOrder) tool - Identification of essential biosynthetic genes through computational molecular co-evolution – novel tool that allows automated identification of essential genes in a biosynthetic gene clusters (BGC) based solely on genomic data
BGCViz - a shiny web app, which uses genomic coordinates of BGCs from different sources for a comprehensive comparison.
Methods and classes to support Biosynthetic Gene Cluster analysis
BGCViz - a shiny web app, which uses genomic coordinates of BGCs from different sources for a comprehensive comparison.
File conversion scripts for DNA sequence data
My final thesis project work from my Biomedical Genomics MSc undertaken at NUIG, 2021. Includes Nextflow, Snakemake, Bash, Python and R scripts.
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