ARGs-OAP: Online Analysis Pipeline for Antibiotic Resistance Genes Detection from Metagenomic Data Using an Integrated Structured ARG Database

R Package for Data-Driven Antimicrobial Stewardship & Surveillance in Hospitals

Command line app for predicting bacterial accumulation

Scripts for accessing information about Aquarium High Throughput Culturing operation types through Trident API.

[NeurIPs High School 2024] A benchmarking study on medical foundation models for antibiotic susceptibility prediction.

Data analysis and prediction of small-molecule accumulation in Gram-negative bacteria

SI-649 Individual Assignment - This website serves as a data analysis regarding three common antibiotic's effects upon various bacterial infections. This visualization is a Tableau Dashboard with the goal of displaying the varying effectiveness of Penicillin, Streptomycin, and Neomycin, on Gram-Positive/Negative bacteria.

A pipeline for our research workflow.

Data and Code

This Python project leverages neural networks to design antibiotic compounds with high affinity for specific targets, based on the IC50 values derived from FASTA target sequences and the generated SMILES representations of compounds.

An educational simple game in Italian/English that simulates interaction between antbiotics and bacteria.

Analysis of potential membrane disruption and stability of antimicrobial cationic peptides by molecular dynamics simulations

An antimicrobial resistance (AMR) dashboard.

Source for "Multi-Objective Evolutionary Optimisation of Antibiotic Treatments" (Ochoa, Christie, Brownlee, & Hoyle, 2020).

PyAMPA: The new version of the AMPA software

This is a final deliverable for a project that attempts to examine the current meat industry through the lens of animal agriculture legislation and aims to identify the barriers to achieving effective animal welfare legislation.

Integrating bacterial molecular genetics with chemical biology for renewed antibacterial drug discovery: Jupyter notebook and data.

A simple simulator that shows the easy way how an antibiogram works

Antimicrobial Peptide web Database built with Django. Decreasing research costs to new antibiotics.

Shiny-based application for personalized dosing of flucloxacillin