allelic-imbalance

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deepomicslab / SpecHLA

SpecHLA reconstructs entire diploid sequences of HLA genes and infers LOH events. It supports HLA-A, -B, -C, -DPA1, -DPB1, -DQA1, -DQB1, and -DRB1 genes. Also, it supports both short- and long-read data.

nanopore cancer phase immunity hla-typing pacbio-data local-assembly loh haplotype reads-binning hla-sequence loss-of-heterozygosity genotype-frequency allelic-imbalance human-leukocyte-antigens

Updated Sep 25, 2024
C

gitikabhardwaj / Genomic-Data-Exploration-Visualizing-Genetic-Variants-and-Allelic-Imbalance

Star

Advanced bioinformatics analysis of RNA sequencing data and genomic databases using R. Explore allelic imbalances, SNP variants, and phylogenetic trees to uncover genetic insights and visualize complex data interactions.

bioinformatics r snps computational-biology data-visualization phylogenetics rnaseq genetic-analysis genetic-variants genomics-data allelic-imbalance

Updated May 30, 2024
R

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