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1. DeepRegFinder DeepRegFinder Public

   DeepRegFinder is a deep learning based program used to identify DNA regulatory elements using ChIP-seq

   Python 9 1

2. ngsplot ngsplot Public

   Quick mining and visualization of NGS data by integrating genomic databases

   R 251 65

3. ngsplotdb ngsplotdb Public

   Genome databases generation pipeline for ngs.plot and region_analysis.

   Shell 16 5

4. diffreps diffreps Public

   Differential analysis for ChIP-seq with biological replicates

   Perl 32 16

5. region_analysis region_analysis Public

   A python script used to annotate genomic intervals.

   Python 18 10

6. NGS-Data-Charmer NGS-Data-Charmer Public

   This repository hosts an automated NGS data analysis (RNA-seq and ChIP-seq) pipeline created using Snakemake.

   Python 4 3