We develop tools and pipelines related to NGS that are used within a Sequencing platform (https://biomics.pasteur.fr) .

Our goal is to provide easy-to-use tools to help students, postdocs, researchers to make the most of their data. Towards this goal, we wanted to integrate expert knowledge (‘omics’) knowledge into workflows based and a uniformised user interface for all workflows. To this end, we have decided to use Snakemake and Python language and developed a common toolbox, re-usable [wrappers](tools for Snakemake pipelines, and a general-purpose Python library for data analysis sequana.

Our pipelines and tools are tested, documented, validated. There are lots of tools and pipelines developed around Sequana. Please have a look here and join us. You are welcome!