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34 Open 214 Closed
34 Open 214 Closed
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Issues list

Milo neighborhood groups as in MiloR enhancement New feature or request
#680 opened Nov 21, 2024 by MaximilianNuber
Different results Mixscape from PertPy vs Seurat bug Something isn't working
#679 opened Nov 12, 2024 by albacorp
@Lilly-May
5
target col naming bug Something isn't working
#673 opened Oct 17, 2024 by Zethson
Reproducibility of mixscape bug Something isn't working
#671 opened Oct 16, 2024 by jesswhitts
@Zethson @Lilly-May
6
TypeError: unhashable type: 'numpy.ndarray' when running perturbation_space bug Something isn't working
#669 opened Oct 14, 2024 by ernesto-iacucci
@Lilly-May
2
Dialogue feature space enhancement New feature or request
#668 opened Oct 13, 2024 by Nusob888
@Zethson
1
Improve UX for metadata module enhancement New feature or request
#664 opened Sep 29, 2024 by Lilly-May
MIXSCAPE - ms.plot_barplot(mdata["rna"], guide_rna_column="NT") shows no graph output with papalexi_2021 provided data bug Something isn't working Needs info❔
#659 opened Sep 19, 2024 by VittoriaDBocchi
@Lilly-May
10
Implement other CRISPR guide assignment methods enhancement New feature or request
#657 opened Sep 19, 2024 by stefanpeidli
@stefanpeidli
1
Feature pertpy use-cases in our tutorial enhancement New feature or request
#642 opened Aug 19, 2024 by Zethson
@Lilly-May
1
possible to compute distances on a subset of genes? enhancement New feature or request
#640 opened Aug 14, 2024 by aterceros
@Zethson
2
Implement MiloDE (diff. expr. testing on top of milo framework) enhancement New feature or request
#635 opened Jul 30, 2024 by stefanpeidli
Update docs with new comparison metrics enhancement New feature or request
#630 opened Jun 24, 2024 by wxicu
FindConservedMarkers implementaion enhancement New feature or request
#629 opened Jun 22, 2024 by SNOL2
1
Improve DE tutorial enhancement New feature or request
#615 opened May 27, 2024 by grst
@Zethson
1
Add linear mixed effects model to DE interface enhancement New feature or request
#614 opened May 27, 2024 by grst
Parallelize DE methods that support it enhancement New feature or request
#613 opened May 27, 2024 by grst
HTML widget for DE Model classes enhancement New feature or request
#611 opened May 27, 2024 by grst
Extend PyDESeq2 class to support arbitrary contrasts and designs enhancement New feature or request
#610 opened May 27, 2024 by grst
@grst
3
Expression prediction tutorial enhancement New feature or request
#587 opened May 2, 2024 by Zethson
1 of 3 tasks
@Zethson @Hrovatin @eroell
1
annotate_compounds for combinations of drugs enhancement New feature or request
#582 opened Apr 9, 2024 by MUCDK
@wxicu
2
Add dataloader for sciplex-GxE enhancement New feature or request
#556 opened Mar 11, 2024 by Zethson
Add dataloader for Jiang et al enhancement New feature or request
#542 opened Feb 20, 2024 by Zethson
1
Get cleaner URLs for documentation enhancement New feature or request
#532 opened Feb 9, 2024 by Zethson
Bootstrap support for error estimation enhancement New feature or request
#497 opened Jan 11, 2024 by eroell 2024
@eroell
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