Merge pull request #926 from bschilder/master

Add rworkflows
ropensci · May 23, 2024 · 889072f · 889072f
2 parents 2a69374 465d52b
commit 889072f
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diff --git a/.Rbuildignore b/.Rbuildignore
@@ -27,3  27,7 @@ colp_search.R
 notes-email-question.R
 log.Rmd
 ^CRAN-SUBMISSION$
 
 node_modules$
 package-lock\.json$
 package\.json$
diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
diff --git a/.github/workflows/rworkflows.yml b/.github/workflows/rworkflows.yml
@@ -0,0  1,52 @@
 name: rworkflows
 'on':
   push:
     branches:
     - master
     - main
     - devel
     - RELEASE_**
   pull_request:
     branches:
     - master
     - main
     - devel
     - RELEASE_**
 jobs:
   rworkflows:
     permissions: write-all
     runs-on: ${{ matrix.config.os }}
     name: ${{ matrix.config.os }} (${{ matrix.config.r }})
     container: ${{ matrix.config.cont }}
     strategy:
       fail-fast: ${{ false }}
       matrix:
         config:
         - os: ubuntu-latest
           bioc: devel
           r: auto
           cont: ghcr.io/bioconductor/bioconductor_docker:devel
           rspm: ~
         - os: macOS-latest
           bioc: release
           r: auto
           cont: ~
           rspm: ~
         - os: windows-latest
           bioc: release
           r: auto
           cont: ~
           rspm: ~
     steps:
     - uses: neurogenomics/rworkflows@master
       with:
         run_bioccheck: ${{ false }}
         run_rcmdcheck: ${{ true }}
         as_cran: ${{ true }}
         run_vignettes: ${{ true }}
         has_testthat: ${{ true }}
         run_covr: ${{ true }}
         run_pkgdown: ${{ true }}
         GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
         run_docker: ${{ true }}
         runner_os: ${{ runner.os }}
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -5,7  5,7 @@ Description: Interacts with a suite of web 'APIs' for taxonomic tasks,
     species names, getting taxonomic hierarchies, fetching downstream and
     upstream taxonomic names, getting taxonomic synonyms, converting
     scientific to common names and vice versa, and more.
-Version: 0.9.100
 Version: 0.9.101
 License: MIT   file LICENSE
 URL: https://docs.ropensci.org/taxize/ (website),
     https://github.com/ropensci/taxize (devel),

diff --git a/NEWS.md b/NEWS.md
@@ -1,3  1,12 @@
 taxize 0.9.101
 
 * Add `rworkflows`.
   - Update *.Rbuildignore* for `rworkflows`.
   - Remove old workflow: *R-CMD-check.yaml*
   - Bump `taxize` version.
   - Add `rworkflows` status badge to *README*.
 
 =============
 taxize 0.9.100
 =============
 

diff --git a/README.Rmd b/README.Rmd
@@ -16,7  16,7 @@ knitr::opts_chunk$set(
 
 [![Project Status: Active – The project has reached a stable, usable state and is being actively developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
 [![cran checks](https://badges.cranchecks.info/worst/taxize.svg)](https://cran.r-project.org/web/checks/check_results_taxize.html)
-[![R-CMD-check](https://github.com/ropensci/taxize/workflows/R-CMD-check/badge.svg)](https://github.com/ropensci/taxize/actions/)
 [![rworkflows](https://github.com/ropensci/taxize/workflows/rworkflows/badge.svg)](https://github.com/ropensci/taxize/actions/)
 [![codecov](https://codecov.io/gh/ropensci/taxize/branch/master/graph/badge.svg)](https://app.codecov.io/gh/ropensci/taxize)
 [![rstudio mirror downloads](https://cranlogs.r-pkg.org/badges/taxize)](https://github.com/r-hub/cranlogs.app)
 [![cran version](https://www.r-pkg.org/badges/version/taxize)](https://cran.r-project.org/package=taxize)

diff --git a/README.md b/README.md
@@ -6,7  6,7 @@ state and is being actively
 developed.](https://www.repostatus.org/badges/latest/active.svg)](https://www.repostatus.org/#active)
 [![cran
 checks](https://badges.cranchecks.info/worst/taxize.svg)](https://cran.r-project.org/web/checks/check_results_taxize.html)
-[![R-CMD-check](https://github.com/ropensci/taxize/workflows/R-CMD-check/badge.svg)](https://github.com/ropensci/taxize/actions/)
 [![rworkflows](https://github.com/ropensci/taxize/workflows/rworkflows/badge.svg)](https://github.com/ropensci/taxize/actions/)
 [![codecov](https://codecov.io/gh/ropensci/taxize/branch/master/graph/badge.svg)](https://app.codecov.io/gh/ropensci/taxize)
 [![rstudio mirror
 downloads](https://cranlogs.r-pkg.org/badges/taxize)](https://github.com/r-hub/cranlogs.app)
@@ -193,13  193,13 @@ we plan to get done for each version.
 
 ## Meta
 
--   Please [report any issues or
-    bugs](https://github.com/ropensci/taxize/issues).
--   License: MIT
--   Get citation information for `taxize` in R doing
-    `citation(package = 'taxize')`
--   Please note that this package is released with a [Contributor Code
-    of Conduct](https://ropensci.org/code-of-conduct/). By contributing
-    to this project, you agree to abide by its terms.
 - Please [report any issues or
   bugs](https://github.com/ropensci/taxize/issues).
 - License: MIT
 - Get citation information for `taxize` in R doing
   `citation(package = 'taxize')`
 - Please note that this package is released with a [Contributor Code of
   Conduct](https://ropensci.org/code-of-conduct/). By contributing to
   this project, you agree to abide by its terms.
 
 [![rofooter](https://ropensci.org/public_images/github_footer.png)](https://ropensci.org)