Classifying Gene Expression Data

Train several neural network based classifiers on the Toil TCGA, TARGET and GTEX expression datasets

To get started look at ingest.ipynb to wrangle the dataset and train.ipynb for a very simple fully connected neural net tumor/normal classifier.

Name		Name	Last commit message	Last commit date
Latest commit History 70 Commits
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
genesets.ipynb		genesets.ipynb
ingest.ipynb		ingest.ipynb
interactions.ipynb		interactions.ipynb
multiclass.ipynb		multiclass.ipynb
pathways.ipynb		pathways.ipynb
shapely.ipynb		shapely.ipynb
train.ipynb		train.ipynb
treehouse.ipynb		treehouse.ipynb

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